{
    "type": "genome",
    "identifier": "GCF_021738965.1",
    "organism": "Gordonia zhenghanii",
    "title": "Gordonia zhenghanii",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Center for Disease Control and Prevention",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_021738965.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN25087068",
        "wgs_master": "JAKKOQ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2911516",
        "species_taxid": "2911516",
        "organism_name": "Gordonia zhenghanii",
        "infraspecific_name": "strain=HY002",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/31",
        "asm_name": "ASM2173896v1",
        "asm_submitter": "Chinese Center for Disease Control and Prevention",
        "gbrs_paired_asm": "GCA_021738965.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/738/965/GCF_021738965.1_ASM2173896v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4103234",
        "genome_size_ungapped": "4103234",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "38",
        "contig_count": "38",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_021738965.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "3846",
        "protein_coding_gene_count": "3739",
        "non_coding_gene_count": "66",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-31",
    "dateModified": "2022-01-31",
    "datePublished": "2022-01-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gordonia zhenghanii"
        ],
        "sample_taxid": [
            "2911516"
        ],
        "sample_host_organism": [
            "bat"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Yunnan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.122 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4103234",
        "Number of Sequences": "38",
        "Longest Sequences (bp)": "776771",
        "N50 (bp)": "336504",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.5",
        "Number of CDSs": "3807",
        "Average Protein Length": "328.4",
        "Coding Ratio (%)": "91.4",
        "Number of rRNAs": "3",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gordonia humi",
                "strain": "strain=DSM 45298",
                "accession": "GCA_014197435.1",
                "taxid": 686429,
                "species_taxid": 686429,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3342,
                "matched_fragments": 941,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia spumicola",
                "strain": "strain=NBRC 107696",
                "accession": "GCA_009932475.1",
                "taxid": 589161,
                "species_taxid": 589161,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2782,
                "matched_fragments": 830,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia zhaorongruii",
                "strain": "strain=HY186",
                "accession": "GCA_007559005.1",
                "taxid": 2597659,
                "species_taxid": 2597659,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9883,
                "matched_fragments": 727,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia malaquae",
                "strain": "strain=DSM 45064",
                "accession": "GCA_900105435.1",
                "taxid": 410332,
                "species_taxid": 410332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8251,
                "matched_fragments": 775,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia malaquae",
                "strain": "strain=NBRC 108250",
                "accession": "GCA_000344135.1",
                "taxid": 410332,
                "species_taxid": 410332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7883,
                "matched_fragments": 775,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia phthalatica",
                "strain": "strain=QH-11",
                "accession": "GCA_001305675.1",
                "taxid": 1136941,
                "species_taxid": 1136941,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2599,
                "matched_fragments": 700,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia paraffinivorans",
                "strain": "strain=NBRC 108238",
                "accession": "GCA_000344155.1",
                "taxid": 175628,
                "species_taxid": 175628,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9261,
                "matched_fragments": 530,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia rubripertincta",
                "strain": "strain=ATCC 14352",
                "accession": "GCA_012396225.1",
                "taxid": 36822,
                "species_taxid": 36822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6702,
                "matched_fragments": 511,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gordonia rubripertincta",
                "strain": "strain=NBRC 101908",
                "accession": "GCA_000327325.1",
                "taxid": 36822,
                "species_taxid": 36822,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.5968,
                "matched_fragments": 507,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Smaragdicoccus niigatensis",
                "strain": "strain=NBRC 103563",
                "accession": "GCA_001552795.1",
                "taxid": 359359,
                "species_taxid": 359359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1625,
                "matched_fragments": 240,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces finlayi",
                "strain": "strain=JCM 4637",
                "accession": "GCA_014650515.1",
                "taxid": 67296,
                "species_taxid": 67296,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0191,
                "matched_fragments": 195,
                "total_fragments": 1349,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014197435.1",
                "gtdb_species": "s__Gordonia humi",
                "ani": 82.3428,
                "matched_fragments": 941,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009932475.1",
                "gtdb_species": "s__Gordonia spumicola",
                "ani": 81.2772,
                "matched_fragments": 830,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007559005.1",
                "gtdb_species": "s__Gordonia sp004353055",
                "ani": 80.9811,
                "matched_fragments": 726,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.65",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000344135.1",
                "gtdb_species": "s__Gordonia malaquae",
                "ani": 80.7723,
                "matched_fragments": 777,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016919385.1",
                "gtdb_species": "s__Gordonia sp016919385",
                "ani": 80.5211,
                "matched_fragments": 776,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000344155.1",
                "gtdb_species": "s__Gordonia paraffinivorans",
                "ani": 78.9505,
                "matched_fragments": 527,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.97",
                "min_intra_species_ani": "98.74",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_000327325.1",
                "gtdb_species": "s__Gordonia rubripertincta",
                "ani": 78.5817,
                "matched_fragments": 509,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.55",
                "min_intra_species_ani": "98.07",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_009914535.1",
                "gtdb_species": "s__Gordonia pseudoamarae",
                "ani": 78.1107,
                "matched_fragments": 423,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001186365.1",
                "gtdb_species": "s__Gordonia jacobaea",
                "ani": 78.0813,
                "matched_fragments": 445,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Gordonia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.30",
                "min_intra_species_ani": "95.68",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_014650415.1",
                "gtdb_species": "s__Streptomyces spiroverticillatus",
                "ani": 76.0587,
                "matched_fragments": 197,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001942465.1",
                "gtdb_species": "s__Spirillospora sp001942465",
                "ani": 75.6332,
                "matched_fragments": 280,
                "total_fragments": 1349,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Spirillospora",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.29,
        "cell_length": -0.067,
        "doubling_h": null,
        "growth_tmp": 28.984,
        "optimum_tmp": 29.25,
        "optimum_ph": 7.479,
        "genome_size": 4870429.978,
        "gc_content": 67.579,
        "coding_genes": 4526.729,
        "rRNA16S_genes": 2.666,
        "tRNA_genes": 48.25,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.8,
        "coccus_cell_shape": 0.15,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.05,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Gordonia",
        "zhenghanii"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}