{ "type": "genome", "identifier": "GCF_021922925.1", "organism": "Clavibacter phaseoli", "title": "Clavibacter phaseoli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Hawaii", "publication": [ {} ], "properties": { "assembly_accession": "GCF_021922925.1", "bioproject": "PRJNA224116", "biosample": "SAMN11855613", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1734031", "species_taxid": "1734031", "organism_name": "Clavibacter phaseoli", "infraspecific_name": "strain=LPPA 982", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/03", "asm_name": "ASM2192292v1", "asm_submitter": "University of Hawaii", "gbrs_paired_asm": "GCA_021922925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/021/922/925/GCF_021922925.1_ASM2192292v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3226754", "genome_size_ungapped": "3226754", "gc_percent": "73.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_021922925.1-RS_2024_03_17", "annotation_date": "2024-03-17", "total_gene_count": "3095", "protein_coding_gene_count": "3028", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-03", "dateModified": "2022-02-03", "datePublished": "2022-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Clavibacter phaseoli" ], "sample_taxid": [ "1734031" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000355695.1", "gtdb_species": "s__Clavibacter nebraskensis", "ani": 93.6352, "matched_fragments": 907, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.1408, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002240565.1", "gtdb_species": "s__Clavibacter insidiosus", "ani": 93.5498, "matched_fragments": 914, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.1408, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "95.88", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900168345.1", "gtdb_species": "s__Clavibacter michiganensis", "ani": 93.5211, "matched_fragments": 933, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.88", "num_clustered_genomes": 49, "status": "-" }, { "accession": "GCF_002931175.1", "gtdb_species": "s__Clavibacter californiensis", "ani": 93.0631, "matched_fragments": 927, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.71", "min_intra_species_ani": "98.71", "mean_intra_species_af": "0.95", 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"status": "-" }, { "accession": "GCF_001280205.1", "gtdb_species": "s__Clavibacter capsici", "ani": 92.1915, "matched_fragments": 907, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_002150995.1", "gtdb_species": "s__Clavibacter michiganensis_K", "ani": 89.9362, "matched_fragments": 914, "total_fragments": 1075, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.42", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": 28.2, "optimum_tmp": 26.333, "optimum_ph": null, "genome_size": 3287966.286, "gc_content": 70.856, "coding_genes": 3004.583, "rRNA16S_genes": 2.0, "tRNA_genes": 45.375, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Clavibacter", "phaseoli" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }