{ "type": "genome", "identifier": "GCF_022008365.1", "organism": "Aequorivita vitellina", "title": "Aequorivita vitellina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Oceanography Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022008365.1", "bioproject": "PRJNA224116", "biosample": "SAMN21240289", "wgs_master": "JAIRBA000000000.1", "refseq_category": "reference genome", "taxid": "2874475", "species_taxid": "2874475", "organism_name": "Aequorivita vitellina", "infraspecific_name": "strain=F47161", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/04", "asm_name": "ASM2200836v1", "asm_submitter": "Oceanography Institute", "gbrs_paired_asm": "GCA_022008365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/008/365/GCF_022008365.1_ASM2200836v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3633834", "genome_size_ungapped": "3633834", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "197", "contig_count": "197", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022008365.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3317", "protein_coding_gene_count": "3224", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-04", "dateModified": "2022-02-04", "datePublished": "2022-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "Aequorivita vitellina" ], "sample_taxid": [ "2874475" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiaoshi Island, Weihai" ], "sample_host_location_id": [], "data_size": "1.028 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3633834", "Number of Sequences": "197", "Longest Sequences (bp)": "229214", "N50 (bp)": "83015", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "3127", "Average Protein Length": "329.3", "Coding Ratio (%)": "85.0", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aequorivita aquimaris", "strain": "strain=D-24", "accession": "GCA_001573155.1", "taxid": 1548749, "species_taxid": 1548749, "relation_to_type": "type", "validated": true, "ani": 80.1153, "matched_fragments": 570, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita vladivostokensis", "strain": "strain=KMM 3516", "accession": "GCA_000952855.1", "taxid": 171194, "species_taxid": 171194, "relation_to_type": "type", "validated": true, "ani": 80.1047, "matched_fragments": 543, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 79.8763, "matched_fragments": 594, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita soesokkakensis", "strain": "strain=RSSK-12", "accession": "GCA_001641085.1", "taxid": 1385699, "species_taxid": 1385699, "relation_to_type": "type", "validated": true, "ani": 79.7533, "matched_fragments": 570, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sublithincola", "strain": "strain=DSM 14238", "accession": "GCA_000265385.1", "taxid": 101385, "species_taxid": 101385, "relation_to_type": "type", "validated": true, "ani": 79.7501, "matched_fragments": 565, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita iocasae", "strain": "strain=KX20305", "accession": "GCA_016757735.1", "taxid": 2803865, "species_taxid": 2803865, "relation_to_type": "type", "validated": true, "ani": 79.684, "matched_fragments": 546, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita antarctica", "strain": "strain=SW49", "accession": "GCA_007997155.1", "taxid": 153266, "species_taxid": 153266, "relation_to_type": "type", "validated": true, "ani": 79.657, "matched_fragments": 615, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita capsosiphonis", "strain": "strain=DSM 23843", "accession": "GCA_000429125.1", "taxid": 487317, "species_taxid": 487317, "relation_to_type": "type", "validated": true, "ani": 78.979, "matched_fragments": 509, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sinensis", "strain": "strain=S1-10", "accession": "GCA_006346335.1", "taxid": 1382458, "species_taxid": 1382458, "relation_to_type": "type", "validated": true, "ani": 78.686, "matched_fragments": 374, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita viscosa", "strain": "strain=CGMCC 1.11023", "accession": "GCA_900106795.1", "taxid": 797419, "species_taxid": 797419, "relation_to_type": "type", "validated": true, "ani": 78.4689, "matched_fragments": 351, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita viscosa", "strain": "strain=DSM 26349", "accession": "GCA_900141955.1", "taxid": 797419, "species_taxid": 797419, "relation_to_type": "type", "validated": true, "ani": 78.4406, "matched_fragments": 352, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita echinoideorum", "strain": "strain=JCM30378", "accession": "GCA_018476645.1", "taxid": 1549647, "species_taxid": 1549647, "relation_to_type": "type", "validated": true, "ani": 77.832, "matched_fragments": 287, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomarinibacterium sedimenti", "strain": "strain=CAU 1614", "accession": "GCA_019312585.1", "taxid": 2857106, "species_taxid": 2857106, "relation_to_type": "type", "validated": true, "ani": 76.826, "matched_fragments": 147, "total_fragments": 1144, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, 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