{ "type": "genome", "identifier": "GCF_022012485.1", "organism": "Bradyrhizobium zhengyangense", "title": "Bradyrhizobium zhengyangense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhengzhou University of light industry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022012485.1", "bioproject": "PRJNA224116", "biosample": "SAMN24966686", "wgs_master": "JAKLTY000000000.1", "refseq_category": "na", "taxid": "2911009", "species_taxid": "2911009", "organism_name": "Bradyrhizobium zhengyangense", "infraspecific_name": "strain=WYCCWR 13023", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/05", "asm_name": "ASM2201248v1", "asm_submitter": "Zhengzhou University of light industry", "gbrs_paired_asm": "GCA_022012485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/012/485/GCF_022012485.1_ASM2201248v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9004494", "genome_size_ungapped": "9004200", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "118", "contig_count": "118", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022012485.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "8655", "protein_coding_gene_count": "8348", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-05", "dateModified": "2022-02-05", "datePublished": "2022-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium zhengyangense" ], "sample_taxid": [ "2911009" ], "sample_host_organism": [ "peanut" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Zhengyang" ], "sample_host_location_id": [], "data_size": "2.511 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9004494", "Number of Sequences": "118", "Longest Sequences (bp)": "670634", "N50 (bp)": "239309", "Gap Ratio (%)": "0.003265", "GCcontent (%)": "62.9", "Number of CDSs": "8660", "Average Protein Length": "295.0", "Coding Ratio (%)": "85.1", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium guangzhouense", "strain": "strain=CCBAU 51670", "accession": "GCA_004114955.1", "taxid": 1325095, "species_taxid": 1325095, "relation_to_type": "type", "validated": true, "ani": 93.1126, "matched_fragments": 2358, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium manausense", "strain": "strain=BR 3351", "accession": "GCA_001440035.1", "taxid": 989370, "species_taxid": 989370, "relation_to_type": "suspected-type", "validated": true, "ani": 91.144, "matched_fragments": 2033, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangdongense", "strain": "strain=CCBAU 51649", "accession": "GCA_004114975.1", "taxid": 1325090, "species_taxid": 1325090, "relation_to_type": "type", "validated": true, "ani": 89.9644, "matched_fragments": 2226, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangxiense", "strain": "strain=CCBAU 53363", "accession": "GCA_004114915.1", "taxid": 1325115, "species_taxid": 1325115, "relation_to_type": "type", "validated": true, "ani": 89.0676, "matched_fragments": 2104, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium rifense", "strain": "strain=CTAW71", "accession": "GCA_008123425.1", "taxid": 515499, "species_taxid": 515499, "relation_to_type": "type", "validated": true, "ani": 89.0359, "matched_fragments": 1984, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium campsiandrae", "strain": "strain=INPA 394B", "accession": "GCA_014529705.1", "taxid": 1729892, "species_taxid": 1729892, "relation_to_type": "type", "validated": true, "ani": 88.8972, "matched_fragments": 1934, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cytisi", "strain": "strain=CTAW11", "accession": "GCA_008123515.1", "taxid": 515489, "species_taxid": 515489, "relation_to_type": "type", "validated": true, "ani": 88.8614, "matched_fragments": 1877, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium stylosanthis", "strain": "strain=BR 446", "accession": "GCA_001641335.1", "taxid": 1803665, "species_taxid": 1803665, "relation_to_type": "type", "validated": true, "ani": 87.7567, "matched_fragments": 1931, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, "relation_to_type": "type", "validated": true, "ani": 87.7171, "matched_fragments": 1909, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium arachidis", "strain": "strain=LMG 26795", "accession": "GCA_900116675.1", "taxid": 858423, "species_taxid": 858423, "relation_to_type": "type", "validated": true, "ani": 87.6618, "matched_fragments": 1947, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium arachidis", "strain": "strain=CCBAU 051107", "accession": "GCA_015291705.1", "taxid": 858423, "species_taxid": 858423, "relation_to_type": "type", "validated": true, "ani": 87.6434, "matched_fragments": 1972, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000472985.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 87.5722, "matched_fragments": 1951, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=NBRC 14783", "accession": "GCA_006539645.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 87.5427, "matched_fragments": 1936, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 87.5287, "matched_fragments": 1749, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000284375.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 87.5087, "matched_fragments": 1972, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 87.3784, "matched_fragments": 1844, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cajani", "strain": "strain=1010", "accession": "GCA_009759665.1", "taxid": 1928661, "species_taxid": 1928661, "relation_to_type": "type", "validated": true, "ani": 87.2806, "matched_fragments": 1843, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 87.2082, "matched_fragments": 1893, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nanningense", "strain": "strain=CCBAU 53390", "accession": "GCA_004114535.1", "taxid": 1325118, "species_taxid": 1325118, "relation_to_type": "type", "validated": true, "ani": 87.0203, "matched_fragments": 1820, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium frederickii", "strain": "strain=CNPSo 3426", "accession": "GCA_004570865.1", "taxid": 2560054, "species_taxid": 2560054, "relation_to_type": "type", "validated": true, "ani": 86.9896, "matched_fragments": 1791, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 86.7851, "matched_fragments": 1766, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 82.5889, "matched_fragments": 1454, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 82.3941, "matched_fragments": 1394, "total_fragments": 2935, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004114955.1", "gtdb_species": "s__Bradyrhizobium guangzhouense", "ani": 93.1186, "matched_fragments": 2357, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.35", "min_intra_species_ani": "98.94", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015291665.1", "gtdb_species": "s__Bradyrhizobium sp015291665", "ani": 91.1419, "matched_fragments": 2213, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001440035.1", "gtdb_species": "s__Bradyrhizobium manausense", "ani": 91.1412, "matched_fragments": 2033, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015291645.1", "gtdb_species": "s__Bradyrhizobium sp015291645", "ani": 91.0915, "matched_fragments": 2242, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018131105.1", "gtdb_species": "s__Bradyrhizobium manausense_B", "ani": 89.1171, "matched_fragments": 1872, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015291745.1", "gtdb_species": "s__Bradyrhizobium sp015291745", "ani": 89.0606, "matched_fragments": 2129, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.82", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_018130615.1", "gtdb_species": "s__Bradyrhizobium manausense_A", "ani": 89.0255, "matched_fragments": 1962, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.96", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014529705.1", "gtdb_species": "s__Bradyrhizobium campsiandrae", "ani": 88.8999, "matched_fragments": 1934, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008123515.1", "gtdb_species": "s__Bradyrhizobium cytisi", "ani": 88.8525, "matched_fragments": 1879, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000473045.1", "gtdb_species": "s__Bradyrhizobium sp000473045", "ani": 88.7686, "matched_fragments": 1919, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017872875.1", "gtdb_species": "s__Bradyrhizobium sp017872875", "ani": 88.7421, "matched_fragments": 1878, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900115265.1", "gtdb_species": "s__Bradyrhizobium sp900115265", "ani": 88.1549, "matched_fragments": 1887, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004571025.1", "gtdb_species": "s__Bradyrhizobium niftali", "ani": 87.7244, "matched_fragments": 1908, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.49", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_015291705.1", "gtdb_species": "s__Bradyrhizobium arachidis", "ani": 87.6677, "matched_fragments": 1968, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "98.47", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014198245.1", "gtdb_species": "s__Bradyrhizobium sp014198245", "ani": 87.5859, "matched_fragments": 1872, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000284375.1", "gtdb_species": "s__Bradyrhizobium japonicum", "ani": 87.4944, "matched_fragments": 1974, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.38", "min_intra_species_ani": "95.55", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.80", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_011516635.3", "gtdb_species": "s__Bradyrhizobium sp011516635", "ani": 87.475, "matched_fragments": 1961, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.65", "min_intra_species_ani": "95.57", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.75", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_002531575.1", "gtdb_species": "s__Bradyrhizobium sp002531575", "ani": 87.4685, "matched_fragments": 1841, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002776695.1", "gtdb_species": "s__Bradyrhizobium nitroreducens", "ani": 87.3833, "matched_fragments": 1844, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900114915.1", "gtdb_species": "s__Bradyrhizobium sp900114915", "ani": 87.2068, "matched_fragments": 1856, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.76", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.88", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900094605.1", "gtdb_species": "s__Bradyrhizobium shewense", "ani": 87.1982, "matched_fragments": 1893, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.95", "min_intra_species_ani": "97.95", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.88", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_011602485.1", "gtdb_species": "s__Bradyrhizobium sp011602485", "ani": 87.0769, "matched_fragments": 1799, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.68", "min_intra_species_ani": "97.67", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004570865.1", "gtdb_species": "s__Bradyrhizobium frederickii", "ani": 86.9745, "matched_fragments": 1793, "total_fragments": 2935, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Bradyrhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": "97.32", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.132, "cell_length": 0.272, "doubling_h": 1.189, "growth_tmp": 28.766, "optimum_tmp": 28.773, "optimum_ph": 7.035, "genome_size": 8573557.767, "gc_content": 63.651, "coding_genes": 7833.366, "rRNA16S_genes": 1.416, "tRNA_genes": 52.57, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.071, "aerobic_respiration": 0.928, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bradyrhizobium", "zhengyangense" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }