{ "type": "genome", "identifier": "GCF_022014495.1", "organism": "Sandaracinobacteroides sayramensis", "title": "Sandaracinobacteroides sayramensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022014495.1", "bioproject": "PRJNA224116", "biosample": "SAMN25352551", "wgs_master": "JAKLSQ000000000.1", "refseq_category": "reference genome", "taxid": "2913411", "species_taxid": "2913411", "organism_name": "Sandaracinobacteroides sayramensis", "infraspecific_name": "strain=RS1-74", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/05", "asm_name": "ASM2201449v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_022014495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/014/495/GCF_022014495.1_ASM2201449v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3821644", "genome_size_ungapped": "3821631", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "41", "contig_count": "41", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-08", "total_gene_count": "3588", "protein_coding_gene_count": "3517", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-05", "dateModified": "2022-02-05", "datePublished": "2022-02-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Sandaracinobacteroides sayramensis" ], "sample_taxid": [ "2913411" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Xinjiang" ], "sample_host_location_id": [], "data_size": "1.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3821644", "Number of Sequences": "41", "Longest Sequences (bp)": "584415", "N50 (bp)": "205008", "Gap Ratio (%)": "0.000994", "GCcontent (%)": "66.5", "Number of CDSs": "3497", "Average Protein Length": "324.3", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sandarakinorhabdus rubra", "strain": "strain=MO-4", "accession": "GCA_010994245.1", "taxid": 2672568, "species_taxid": 2672568, "relation_to_type": "type", "validated": true, "ani": 78.1087, "matched_fragments": 256, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermaurantiacus tibetensis", "strain": "strain=SYSU G02173", "accession": "GCA_015354055.1", "taxid": 2759035, "species_taxid": 2759035, "relation_to_type": "type", "validated": true, "ani": 77.867, "matched_fragments": 312, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium cloacae", "strain": "strain=JCM 10874", "accession": "GCA_002355855.1", "taxid": 120107, "species_taxid": 120107, "relation_to_type": "type", "validated": true, "ani": 77.857, "matched_fragments": 312, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tardibacter chloracetimidivorans", "strain": "strain=JJ-A5", "accession": "GCA_001890385.1", "taxid": 1921510, "species_taxid": 1921510, "relation_to_type": "type", "validated": true, "ani": 77.8305, "matched_fragments": 210, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas sanxanigenens", "strain": "strain=NX02", "accession": "GCA_000512205.2", "taxid": 397260, "species_taxid": 397260, "relation_to_type": "type", "validated": true, "ani": 77.8123, "matched_fragments": 351, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas profundi", "strain": "strain=LMO-1", "accession": "GCA_009739515.1", "taxid": 2681549, "species_taxid": 2681549, "relation_to_type": "type", "validated": true, "ani": 77.8005, "matched_fragments": 351, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium indicum", "strain": "strain=B90A", "accession": "GCA_000264945.2", "taxid": 332055, "species_taxid": 332055, "relation_to_type": "type", "validated": true, "ani": 77.7906, "matched_fragments": 284, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas flavalba", "strain": "strain=ZLT-5", "accession": "GCA_004796535.1", "taxid": 2559804, "species_taxid": 2559804, "relation_to_type": "type", "validated": true, "ani": 77.7897, "matched_fragments": 301, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas formosensis", "strain": "strain=CC-Nfb-2", "accession": "GCA_009755815.1", "taxid": 861534, "species_taxid": 861534, "relation_to_type": "type", "validated": true, "ani": 77.701, "matched_fragments": 332, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas ginsenosidimutans", "strain": "strain=KACC 14949", "accession": "GCA_002374835.1", "taxid": 862134, "species_taxid": 862134, "relation_to_type": "type", "validated": true, "ani": 77.671, "matched_fragments": 274, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedomonas mirosovicensis", "strain": "strain=A1X5R2", "accession": "GCA_022569295.1", "taxid": 2908641, "species_taxid": 2908641, "relation_to_type": "type", "validated": true, "ani": 77.6382, "matched_fragments": 242, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas abaci", "strain": "strain=DSM 15867", "accession": "GCA_014199625.1", "taxid": 237611, "species_taxid": 237611, "relation_to_type": "type", "validated": true, "ani": 77.6341, "matched_fragments": 275, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas trueperi", "strain": "strain=DSM 7225", "accession": "GCA_011927635.1", "taxid": 53317, "species_taxid": 53317, "relation_to_type": "type", "validated": true, "ani": 77.5524, "matched_fragments": 312, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas aracearum", "strain": "strain=WZY 27", "accession": "GCA_003345355.1", "taxid": 2283317, "species_taxid": 2283317, "relation_to_type": "type", "validated": true, "ani": 77.5444, "matched_fragments": 260, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas metalli", "strain": "strain=CGMCC 1.15330", "accession": "GCA_014641735.1", "taxid": 1779358, "species_taxid": 1779358, "relation_to_type": "type", "validated": true, "ani": 77.5172, "matched_fragments": 267, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polymorphobacter multimanifer", "strain": "strain=JCM 18140", "accession": "GCA_014647295.1", "taxid": 1070431, "species_taxid": 1070431, "relation_to_type": "type", "validated": true, "ani": 77.4861, "matched_fragments": 238, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium jiangsuense", "strain": "strain=DSM 26189", "accession": "GCA_014196495.1", "taxid": 870476, "species_taxid": 870476, "relation_to_type": "type", "validated": true, "ani": 77.4699, "matched_fragments": 353, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas morindae", "strain": "strain=NBD5", "accession": "GCA_023822065.1", "taxid": 1541170, "species_taxid": 1541170, "relation_to_type": "type", "validated": true, "ani": 77.4694, "matched_fragments": 327, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas piscis", "strain": "strain=HDW15B", "accession": "GCA_011300455.1", "taxid": 2714943, "species_taxid": 2714943, "relation_to_type": "type", "validated": true, "ani": 77.4631, "matched_fragments": 148, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=DSM 18781", "accession": "GCA_004152845.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.4469, "matched_fragments": 295, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium fuliginis", "strain": "strain=CCM 7327", "accession": "GCA_014636045.1", "taxid": 336203, "species_taxid": 336203, "relation_to_type": "type", "validated": true, "ani": 77.4452, "matched_fragments": 290, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polymorphobacter multimanifer", "strain": "strain=DSM 102189", "accession": "GCA_014205635.1", "taxid": 1070431, "species_taxid": 1070431, "relation_to_type": "type", "validated": true, "ani": 77.4346, "matched_fragments": 264, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas folli", "strain": "strain=RHCKR7", "accession": "GCA_019429525.1", "taxid": 2862497, "species_taxid": 2862497, "relation_to_type": "type", "validated": true, "ani": 77.2293, "matched_fragments": 273, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas yunnanensis", "strain": "strain=YIM 3", "accession": "GCA_019898765.1", "taxid": 310400, "species_taxid": 310400, "relation_to_type": "type", "validated": true, "ani": 77.1893, "matched_fragments": 265, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingobium sufflavum", "strain": "strain=HL-25", "accession": "GCA_021403115.1", "taxid": 1129547, "species_taxid": 1129547, "relation_to_type": "type", "validated": true, "ani": 77.1529, "matched_fragments": 232, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomicrobium aestuariivivum", "strain": "strain=KCTC 42286", "accession": "GCA_024721585.1", "taxid": 1582356, "species_taxid": 1582356, "relation_to_type": "type", "validated": true, "ani": 77.0731, "matched_fragments": 171, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas citri", "strain": "strain=RRHST34", "accession": "GCA_019429485.1", "taxid": 2862499, "species_taxid": 2862499, "relation_to_type": "type", "validated": true, "ani": 77.062, "matched_fragments": 287, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000836695.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 76.1482, "matched_fragments": 169, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus sanguinis", "strain": "strain=DSM 29303", "accession": "GCA_900106665.1", "taxid": 1545044, "species_taxid": 1545044, "relation_to_type": "type", "validated": true, "ani": 76.0702, "matched_fragments": 180, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wenxinia marina", "strain": "strain=DSM 24838", "accession": "GCA_000379485.1", "taxid": 390641, "species_taxid": 390641, "relation_to_type": "type", "validated": true, "ani": 76.0526, "matched_fragments": 167, "total_fragments": 1254, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003248865.1", "gtdb_species": "s__Sandaracinobacter sp003248865", "ani": 81.939, "matched_fragments": 613, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandaracinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006385875.1", "gtdb_species": "s__Sandaracinobacter neustonicus", "ani": 81.4985, "matched_fragments": 620, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandaracinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016464365.1", "gtdb_species": "s__Sandaracinobacter sp016464365", "ani": 80.8646, "matched_fragments": 585, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandaracinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002422985.1", "gtdb_species": "s__Sandaracinobacter sp002422985", "ani": 78.6889, "matched_fragments": 314, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sandaracinobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014117445.1", "gtdb_species": "s__GCA-014117445 sp014117445", "ani": 78.5168, "matched_fragments": 377, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__GCA-014117445", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004796535.1", "gtdb_species": "s__Sphingomonas_L sp004796535", "ani": 77.7611, "matched_fragments": 305, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_L", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009755815.1", "gtdb_species": "s__Sphingomonas_M formosensis", "ani": 77.6817, "matched_fragments": 334, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas_M", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001476905.1", "gtdb_species": "s__Sphingomonas sanguinis_B", "ani": 77.5342, "matched_fragments": 236, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.13", "min_intra_species_ani": "96.11", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_003345355.1", "gtdb_species": "s__Sphingomonas sp003345355", "ani": 77.534, "matched_fragments": 261, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097155.1", "gtdb_species": "s__Glacieibacterium frigidum", "ani": 77.4186, "matched_fragments": 281, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Glacieibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003355005.1", "gtdb_species": "s__Sphingomonas sp003355005", "ani": 77.4169, "matched_fragments": 247, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004681125.1", "gtdb_species": "s__Polymorphobacter_A arshaanensis", "ani": 77.3634, "matched_fragments": 243, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Polymorphobacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004345855.1", "gtdb_species": "s__Sphingomonas sp004345855", "ani": 77.1824, "matched_fragments": 294, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900106665.1", "gtdb_species": "s__Paracoccus sanguinis", "ani": 76.0741, "matched_fragments": 181, "total_fragments": 1254, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paracoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.10", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.81", "num_clustered_genomes": 6, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Sandaracinobacteroides", "sayramensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }