{ "type": "genome", "identifier": "GCF_022024115.1", "organism": "Prevotella communis", "title": "Prevotella communis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Ljubljana", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022024115.1", "bioproject": "PRJNA224116", "biosample": "SAMN25263444", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2913614", "species_taxid": "2913614", "organism_name": "Prevotella communis", "infraspecific_name": "strain=E1-9", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/07", "asm_name": "ASM2202411v1", "asm_submitter": "University of Ljubljana", "gbrs_paired_asm": "GCA_022024115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/024/115/GCF_022024115.1_ASM2202411v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3567699", "genome_size_ungapped": "3567699", "gc_percent": "48.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022024115.1-RS_2024_06_03", "annotation_date": "2024-06-03", "total_gene_count": "2941", "protein_coding_gene_count": "2841", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-07", "dateModified": "2022-02-07", "datePublished": "2022-02-07", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella communis" ], "sample_taxid": [ "2913614" ], "sample_host_organism": [ "Ovis aries" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Slovenia" ], "sample_host_location_id": [], "data_size": "1.014 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3567699", "Number of Sequences": "1", "Longest Sequences (bp)": "3567699", "N50 (bp)": "3567699", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "48.6", "Number of CDSs": "2843", "Average Protein Length": "377.4", "Coding Ratio (%)": "90.2", "Number of rRNAs": "12", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella brevis", "strain": "strain=ATCC 19188", "accession": "GCA_000621725.1", "taxid": 83231, "species_taxid": 83231, "relation_to_type": "type", "validated": true, "ani": 80.0978, "matched_fragments": 361, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=Bryant 23", "accession": "GCA_000025925.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 79.6785, "matched_fragments": 293, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella ruminicola", "strain": "strain=ATCC 19189", "accession": "GCA_900108375.1", "taxid": 839, "species_taxid": 839, "relation_to_type": "type", "validated": true, "ani": 79.6033, "matched_fragments": 293, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella lacticifex", "strain": "strain=R5019", "accession": "GCA_019973375.1", "taxid": 2854755, "species_taxid": 2854755, "relation_to_type": "type", "validated": true, "ani": 78.3438, "matched_fragments": 70, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_001262015.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 78.1538, "matched_fragments": 85, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella fusca", "strain": "strain=W1435", "accession": "GCA_018128145.1", "taxid": 589436, "species_taxid": 589436, "relation_to_type": "type", "validated": true, "ani": 78.1402, "matched_fragments": 85, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_025151535.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 78.055, "matched_fragments": 127, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_000157935.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 78.0046, "matched_fragments": 128, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multisaccharivorax", "strain": "strain=DSM 17128", "accession": "GCA_000218235.1", "taxid": 310514, "species_taxid": 310514, "relation_to_type": "type", "validated": true, "ani": 77.9796, "matched_fragments": 58, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella multisaccharivorax", "strain": "strain=JCM 12954", "accession": "GCA_019973315.1", "taxid": 310514, "species_taxid": 310514, "relation_to_type": "type", "validated": true, "ani": 77.589, "matched_fragments": 56, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella copri", "strain": "strain=DSM 18205", "accession": "GCA_009495405.1", "taxid": 165179, "species_taxid": 165179, "relation_to_type": "suspected-type", "validated": true, "ani": 77.5218, "matched_fragments": 122, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella stercorea", "strain": "strain=DSM 18206", "accession": "GCA_000235885.1", "taxid": 363265, "species_taxid": 363265, "relation_to_type": "suspected-type", "validated": true, "ani": 77.3834, "matched_fragments": 92, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella buccae", "strain": "strain=ATCC 33574", "accession": "GCA_000184945.1", "taxid": 28126, "species_taxid": 28126, "relation_to_type": "type", "validated": true, "ani": 77.3699, "matched_fragments": 79, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xylanibacter rodentium", "strain": "strain=PROD", "accession": "GCA_013166575.1", "taxid": 2736289, "species_taxid": 2736289, "relation_to_type": "type", "validated": true, "ani": 77.2917, "matched_fragments": 80, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella faecis", "strain": "strain=CLA-AA-H145", "accession": "GCA_018789675.1", "taxid": 2841596, "species_taxid": 2841596, "relation_to_type": "type", "validated": true, "ani": 77.22, "matched_fragments": 91, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hallella seregens", "strain": "strain=ATCC 51272", "accession": "GCA_000518545.1", "taxid": 52229, "species_taxid": 52229, "relation_to_type": "type", "validated": true, "ani": 76.5712, "matched_fragments": 76, "total_fragments": 1189, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_900100635.1", "gtdb_species": "s__Prevotella sp900100635", "ani": 97.4451, "matched_fragments": 1001, "total_fragments": 1189, 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