{ "type": "genome", "identifier": "GCF_022095695.1", "organism": "Oceanobacillus jordanicus", "title": "Oceanobacillus jordanicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The University of Jordan", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022095695.1", "bioproject": "PRJNA224116", "biosample": "SAMN20694754", "wgs_master": "JAIFZM000000000.1", "refseq_category": "reference genome", "taxid": "2867266", "species_taxid": "2867266", "organism_name": "Oceanobacillus jordanicus", "infraspecific_name": "strain=GSFE11", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/08", "asm_name": "ASM2209569v1", "asm_submitter": "The University of Jordan", "gbrs_paired_asm": "GCA_022095695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/095/695/GCF_022095695.1_ASM2209569v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3838908", "genome_size_ungapped": "3838908", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022095695.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3889", "protein_coding_gene_count": "3771", "non_coding_gene_count": "75", "pubmed_id": "35095268" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-08", "dateModified": "2022-02-08", "datePublished": "2022-02-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanobacillus jordanicus" ], "sample_taxid": [ "2867266" ], "sample_host_organism": [ "Triticum turgidum ssp. durum" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Jordan" ], "sample_host_location_id": [], "data_size": "1.095 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3838908", "Number of Sequences": "36", "Longest Sequences (bp)": "454680", "N50 (bp)": "216772", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.1", "Number of CDSs": "3824", "Average Protein Length": "284.0", "Coding Ratio (%)": "84.9", "Number of rRNAs": "7", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanobacillus jordanicus", "strain": "strain=GSFE11", "accession": "GCA_022095695.1", "taxid": 2867266, "species_taxid": 2867266, "relation_to_type": "type", "validated": true, "ani": 100.0, 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1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus ndiopensis", "strain": "strain=Marseille-P3835", "accession": "GCA_900187325.1", "taxid": 2004408, "species_taxid": 2004408, "relation_to_type": "type", "validated": true, "ani": 77.3069, "matched_fragments": 148, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus oceani", "strain": "strain=CGMCC 1.12754", "accession": "GCA_014638995.1", "taxid": 1479511, "species_taxid": 1479511, "relation_to_type": "type", "validated": true, "ani": 77.2574, "matched_fragments": 139, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus pantothenticus", "strain": "strain=DSM 26", "accession": "GCA_001189575.1", "taxid": 1473, "species_taxid": 1473, "relation_to_type": "type", "validated": true, "ani": 77.1111, "matched_fragments": 133, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus pantothenticus", "strain": "strain=DSM 26", "accession": "GCA_900156795.1", "taxid": 1473, "species_taxid": 1473, "relation_to_type": "type", "validated": true, "ani": 77.0927, "matched_fragments": 134, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus koreensis", "strain": "strain=JCM 12387", "accession": "GCA_025154055.1", "taxid": 279446, "species_taxid": 279446, "relation_to_type": "type", "validated": true, "ani": 77.07, "matched_fragments": 78, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus halotolerans", "strain": "strain=DSM 25060", "accession": "GCA_016908515.1", "taxid": 1071053, "species_taxid": 1071053, "relation_to_type": "type", "validated": true, "ani": 77.0698, "matched_fragments": 146, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus halophilus", "strain": "strain=IBRC-M 10683", "accession": "GCA_900129485.1", "taxid": 930117, "species_taxid": 930117, "relation_to_type": "type", "validated": true, "ani": 77.061, "matched_fragments": 146, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus lacisalsi", "strain": "strain=DSM 19029", "accession": "GCA_000377765.1", "taxid": 393087, "species_taxid": 393087, "relation_to_type": "type", "validated": true, "ani": 77.0377, "matched_fragments": 74, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanobacillus salinisoli", "strain": "strain=YIM B00359", "accession": "GCA_009733865.1", "taxid": 2678611, "species_taxid": 2678611, "relation_to_type": "type", "validated": true, "ani": 76.8755, "matched_fragments": 124, "total_fragments": 1260, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus oryzae", "strain": 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"97.99", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCF_000724085.1", "gtdb_species": "s__Virgibacillus manasiensis", "ani": 84.7388, "matched_fragments": 884, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001310895.1", "gtdb_species": "s__Virgibacillus halodenitrificans", "ani": 78.1889, "matched_fragments": 178, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "98.21", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002266285.1", "gtdb_species": "s__Virgibacillus_G indicus", "ani": 77.6786, "matched_fragments": 182, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Virgibacillus_G", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009728145.1", "gtdb_species": "s__Ornithinibacillus caprae", "ani": 77.6002, "matched_fragments": 141, "total_fragments": 1260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Amphibacillaceae;g__Ornithinibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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1260, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Niallia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.58", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.211, "cell_length": 0.321, "doubling_h": null, "growth_tmp": 30.75, "optimum_tmp": 34.692, "optimum_ph": 8.022, "genome_size": 4124338.681, "gc_content": 37.251, "coding_genes": 3521.75, "rRNA16S_genes": 7.0, "tRNA_genes": 67.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.066, "anaerobic_respiration": 0.066, "aerobic_respiration": 0.866, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Oceanobacillus", "jordanicus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }