{ "type": "genome", "identifier": "GCF_022171985.1", "organism": "Huaxiibacter chinensis", "title": "Huaxiibacter chinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "West China Hospital, Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022171985.1", "bioproject": "PRJNA224116", "biosample": "SAMN24596079", "wgs_master": "JAJVHF000000000.1", "refseq_category": "reference genome", "taxid": "2899785", "species_taxid": "2899785", "organism_name": "Huaxiibacter chinensis", "infraspecific_name": "strain=155047", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/10", "asm_name": "ASM2217198v1", "asm_submitter": "West China Hospital, Sichuan University", "gbrs_paired_asm": "GCA_022171985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/171/985/GCF_022171985.1_ASM2217198v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4990088", "genome_size_ungapped": "4990088", "gc_percent": "53.500000", "replicon_count": "0", "scaffold_count": "98", "contig_count": "98", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022171985.1-RS_2024_09_14", "annotation_date": "2024-09-14", "total_gene_count": "4834", "protein_coding_gene_count": "4637", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-10", "dateModified": "2022-02-10", "datePublished": "2022-02-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Huaxiibacter chinensis" ], "sample_taxid": [ "2899785" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Chengdu, Sichuan" ], "sample_host_location_id": [], "data_size": "1.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4990088", "Number of Sequences": "98", "Longest Sequences (bp)": "1215918", "N50 (bp)": "358667", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.7", "Number of CDSs": "4672", "Average Protein Length": "312.5", "Coding Ratio (%)": "87.8", "Number of rRNAs": "2", "Number of tRNAs": "74", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterobacter cloacae", "strain": "strain=DSM 30054", "accession": "GCA_021469225.1", "taxid": 550, "species_taxid": 550, "relation_to_type": "type", "validated": true, "ani": 84.454, "matched_fragments": 1193, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia nimipressuralis", "strain": "strain=CCUG 25894", "accession": "GCA_004115925.1", "taxid": 69220, "species_taxid": 69220, "relation_to_type": "type", "validated": true, "ani": 84.2678, "matched_fragments": 1124, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=FDAARGOS_892", "accession": "GCA_016027695.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 84.1778, "matched_fragments": 1070, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter asburiae", "strain": "strain=ATCC 35953", "accession": "GCA_001521715.1", "taxid": 61645, "species_taxid": 61645, "relation_to_type": "type", "validated": true, "ani": 84.1638, "matched_fragments": 1068, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 84.1268, "matched_fragments": 1087, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter oligotrophicus", "strain": "strain=CCA6", "accession": "GCA_009176645.1", "taxid": 2478464, "species_taxid": 2478464, "relation_to_type": "type", "validated": true, "ani": 84.1068, "matched_fragments": 1138, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter cancerogenus", "strain": "", "accession": "GCA_900185905.1", "taxid": 69218, "species_taxid": 69218, "relation_to_type": "type", "validated": true, "ani": 84.0695, "matched_fragments": 1132, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, "species_taxid": 2529381, "relation_to_type": "type", "validated": true, "ani": 84.0688, "matched_fragments": 1141, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter chengduensis", "strain": "strain=WCHECl-C4 = WCHECh050004", "accession": "GCA_001984825.2", "taxid": 2494701, "species_taxid": 2494701, "relation_to_type": "type", "validated": true, "ani": 84.0142, "matched_fragments": 1123, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_001875655.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.9899, "matched_fragments": 1146, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter kobei", "strain": "strain=DSM 13645", "accession": "GCA_001729765.1", "taxid": 208224, "species_taxid": 208224, "relation_to_type": "type", "validated": true, "ani": 83.9754, "matched_fragments": 1111, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hormaechei", "strain": "strain=ATCC 49162", "accession": "GCA_000213995.1", "taxid": 301105, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.9498, "matched_fragments": 1142, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei", "strain": "strain=FDAARGOS 1433", "accession": "GCA_019048245.1", "taxid": 158836, "species_taxid": 158836, "relation_to_type": "suspected-type", "validated": true, "ani": 83.9391, "matched_fragments": 1136, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter soli", "strain": "", "accession": "GCA_900185935.1", "taxid": 885040, "species_taxid": 885040, "relation_to_type": "type", "validated": true, "ani": 83.9178, "matched_fragments": 1106, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 83.8747, "matched_fragments": 1091, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter vonholyi", "strain": "strain=E13", "accession": "GCA_008364555.1", "taxid": 2797505, "species_taxid": 2797505, "relation_to_type": "type", "validated": true, "ani": 83.8735, "matched_fragments": 1078, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter soli", "strain": "strain=ATCC BAA-2102", "accession": "GCA_001654845.1", "taxid": 885040, "species_taxid": 885040, "relation_to_type": "type", "validated": true, "ani": 83.8249, "matched_fragments": 1111, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=LMG 2784", "accession": "GCA_002553545.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 83.8236, "matched_fragments": 1068, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=FDAARGOS 1444", "accession": "GCA_019047465.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 83.8188, "matched_fragments": 1101, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lelliottia amnigena", "strain": "strain=NBRC 105700", "accession": "GCA_001514515.1", "taxid": 61646, "species_taxid": 61646, "relation_to_type": "type", "validated": true, "ani": 83.8038, "matched_fragments": 1087, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter hormaechei subsp. hoffmannii", "strain": "strain=DSM 14563", "accession": "GCA_001729745.1", "taxid": 1812934, "species_taxid": 158836, "relation_to_type": "type", "validated": true, "ani": 83.7293, "matched_fragments": 1135, "total_fragments": 1627, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001652505.2", "gtdb_species": "s__Lelliottia amnigena_A", "ani": 99.7457, "matched_fragments": 1459, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Lelliottia", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.98", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004331265.1", "gtdb_species": "s__Enterobacter wuhouensis", "ani": 84.0689, "matched_fragments": 1141, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_019047785.1", "gtdb_species": "s__Enterobacter cancerogenus", "ani": 84.0673, "matched_fragments": 1131, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_007035645.1", "gtdb_species": "s__Enterobacter asburiae_B", "ani": 84.0209, "matched_fragments": 1093, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.8818, "mean_intra_species_ani": "98.31", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 70, "status": "-" }, { "accession": "GCF_000493015.1", "gtdb_species": "s__Enterobacter sp000493015", "ani": 83.9941, "matched_fragments": 1114, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 95.7595, "mean_intra_species_ani": "98.68", "min_intra_species_ani": "98.68", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008364625.1", "gtdb_species": "s__Enterobacter dykesii", "ani": 83.9936, "matched_fragments": 1083, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", "ani_circumscription_radius": 96.5795, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "97.97", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.95", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_001875655.1", "gtdb_species": "s__Enterobacter hormaechei", "ani": 83.9874, "matched_fragments": 1147, "total_fragments": 1627, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter", 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