{ "type": "genome", "identifier": "GCF_022179145.1", "organism": "Methylobacterium crusticola", "title": "Methylobacterium crusticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022179145.1", "bioproject": "PRJNA224116", "biosample": "SAMD00388908", "wgs_master": "BPQH00000000.1", "refseq_category": "na", "taxid": "1697972", "species_taxid": "1697972", "organism_name": "Methylobacterium crusticola", "infraspecific_name": "strain=KCTC 52305", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/08", "asm_name": "ASM2217914v1", "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "gbrs_paired_asm": "GCA_022179145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/179/145/GCF_022179145.1_ASM2217914v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7680383", "genome_size_ungapped": "7679805", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "790", "contig_count": "790", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022179145.1-RS_2024_12_02", "annotation_date": "2024-12-02", "total_gene_count": "7387", "protein_coding_gene_count": "7121", "non_coding_gene_count": "65", "pubmed_id": "34737731" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-08", "dateModified": "2022-01-08", "datePublished": "2022-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium crusticola" ], "sample_taxid": [ "1697972" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.046 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7680383", "Number of Sequences": "790", "Longest Sequences (bp)": "571168", "N50 (bp)": "270721", "Gap Ratio (%)": "0.007526", "GCcontent (%)": "72.8", "Number of CDSs": "7007", "Average Protein Length": "306.8", "Coding Ratio (%)": "84.0", "Number of rRNAs": "0", "Number of tRNAs": "77", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 84.607, "matched_fragments": 1562, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 84.0001, "matched_fragments": 1400, "total_fragments": 2463, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003574465.1", "gtdb_species": "s__Methylobacterium crusticola", "ani": 99.8862, "matched_fragments": 2228, "total_fragments": 2463, "gtdb_taxonomy": 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