{ "type": "genome", "identifier": "GCF_022179245.1", "organism": "Methylobacterium gregans", "title": "Methylobacterium gregans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022179245.1", "bioproject": "PRJNA224116", "biosample": "SAMD00388917", "wgs_master": "BPQM00000000.1", "refseq_category": "reference genome", "taxid": "374424", "species_taxid": "374424", "organism_name": "Methylobacterium gregans", "infraspecific_name": "strain=NBRC 103626", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/08", "asm_name": "ASM2217924v1", "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "gbrs_paired_asm": "GCA_022179245.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/179/245/GCF_022179245.1_ASM2217924v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5744513", "genome_size_ungapped": "5744513", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "209", "contig_count": "209", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022179245.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "5507", "protein_coding_gene_count": "5301", "non_coding_gene_count": "54", "pubmed_id": "34737731" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-08", "dateModified": "2022-01-08", "datePublished": "2022-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium gregans" ], "sample_taxid": [ "374424" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.564 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5744513", "Number of Sequences": "209", "Longest Sequences (bp)": "175977", "N50 (bp)": "41432", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.3", "Number of CDSs": "5327", "Average Protein Length": "299.5", "Coding Ratio (%)": "83.3", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1796, "total_fragments": 1805, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 91.1155, "matched_fragments": 1373, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiodurans", "strain": "strain=17Sr1-43", "accession": "GCA_003173735.1", "taxid": 2202828, "species_taxid": 2202828, "relation_to_type": "type", "validated": true, "ani": 90.3793, "matched_fragments": 1328, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 86.2216, "matched_fragments": 1140, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 86.206, "matched_fragments": 1199, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 85.5023, "matched_fragments": 1140, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 83.4645, "matched_fragments": 978, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=NBRC 103632", "accession": "GCA_022179585.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 82.5136, "matched_fragments": 1049, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 82.1814, "matched_fragments": 1020, "total_fragments": 1805, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.38, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_003173735.1", "gtdb_species": "s__Methylobacterium radiodurans", "ani": 90.3994, "matched_fragments": 1326, "total_fragments": 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