{ "type": "genome", "identifier": "GCF_022179325.1", "organism": "Methylobacterium isbiliense", "title": "Methylobacterium isbiliense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022179325.1", "bioproject": "PRJNA224116", "biosample": "SAMD00388922", "wgs_master": "BPQQ00000000.1", "refseq_category": "reference genome", "taxid": "315478", "species_taxid": "315478", "organism_name": "Methylobacterium isbiliense", "infraspecific_name": "strain=DSM 17168", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/08", "asm_name": "ASM2217932v1", "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "gbrs_paired_asm": "GCA_022179325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/179/325/GCF_022179325.1_ASM2217932v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6971527", "genome_size_ungapped": "6971527", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "167", "contig_count": "167", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022179325.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "6769", "protein_coding_gene_count": "6532", "non_coding_gene_count": "52", "pubmed_id": "34737731" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-08", "dateModified": "2022-01-08", "datePublished": "2022-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium isbiliense" ], "sample_taxid": [ "315478" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.881 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6971527", "Number of Sequences": "167", "Longest Sequences (bp)": "370219", "N50 (bp)": "85536", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "6734", "Average Protein Length": "296.0", "Coding Ratio (%)": "85.8", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, 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2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 83.4461, "matched_fragments": 1370, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 83.4175, "matched_fragments": 1318, "total_fragments": 2239, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium indicum", "strain": "strain=SE2.11", "accession": "GCA_001043895.1", "taxid": 1775910, "species_taxid": 1775910, "relation_to_type": "type", "validated": true, "ani": 83.3695, "matched_fragments": 1173, "total_fragments": 2239, "ani_threshold": 95, "status": 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