{ "type": "genome", "identifier": "GCF_022179345.1", "organism": "Methylobacterium jeotgali", "title": "Methylobacterium jeotgali", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022179345.1", "bioproject": "PRJNA224116", "biosample": "SAMD00388923", "wgs_master": "BPQR00000000.1", "refseq_category": "reference genome", "taxid": "381630", "species_taxid": "381630", "organism_name": "Methylobacterium jeotgali", "infraspecific_name": "strain=LMG 23639", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/08", "asm_name": "ASM2217934v1", "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "gbrs_paired_asm": "GCA_022179345.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/179/345/GCF_022179345.1_ASM2217934v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4459488", "genome_size_ungapped": "4459488", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "112", "contig_count": "112", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022179345.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4380", "protein_coding_gene_count": "4263", "non_coding_gene_count": "53", "pubmed_id": "34737731" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-08", "dateModified": "2022-01-08", "datePublished": "2022-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium jeotgali" ], "sample_taxid": [ "381630" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.202 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4459488", "Number of Sequences": "112", "Longest Sequences (bp)": "171843", "N50 (bp)": "64725", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "4299", "Average Protein Length": "303.5", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1421, "total_fragments": 1432, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 83.7247, "matched_fragments": 943, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium segetis", "strain": "strain=17J42-1", "accession": "GCA_004348265.1", "taxid": 2488750, "species_taxid": 2488750, "relation_to_type": "type", "validated": true, "ani": 83.6698, "matched_fragments": 898, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 83.59, "matched_fragments": 909, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=NBRC 107715", "accession": "GCA_007992195.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 83.5653, "matched_fragments": 920, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 83.4739, "matched_fragments": 916, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 83.4046, "matched_fragments": 952, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium durans", "strain": "strain=17SD2-17", "accession": "GCA_003173715.1", "taxid": 2202825, "species_taxid": 2202825, "relation_to_type": "type", "validated": true, "ani": 83.142, "matched_fragments": 923, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiodurans", "strain": "strain=17Sr1-43", "accession": "GCA_003173735.1", "taxid": 2202828, "species_taxid": 2202828, "relation_to_type": "type", "validated": true, "ani": 83.0889, "matched_fragments": 888, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 83.054, "matched_fragments": 900, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 82.9452, "matched_fragments": 869, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium cerastii", "strain": "strain=DSM 23679", "accession": "GCA_022179125.1", "taxid": 932741, "species_taxid": 932741, "relation_to_type": "type", "validated": true, "ani": 82.7996, "matched_fragments": 892, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium soli", "strain": "strain=YIM 48816", "accession": "GCA_008806385.1", "taxid": 553447, "species_taxid": 553447, "relation_to_type": "type", "validated": true, "ani": 82.6094, "matched_fragments": 902, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium soli", "strain": "strain=KCTC 22810", "accession": "GCA_022179555.1", "taxid": 553447, "species_taxid": 553447, "relation_to_type": "type", "validated": true, "ani": 82.2667, "matched_fragments": 733, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium aerolatum", "strain": "strain=DSM 19013", "accession": "GCA_022179085.1", "taxid": 418708, "species_taxid": 418708, "relation_to_type": "type", "validated": true, "ani": 81.4537, "matched_fragments": 793, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 81.1972, "matched_fragments": 856, "total_fragments": 1432, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, 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