{
    "type": "genome",
    "identifier": "GCF_022179385.1",
    "organism": "Methylobacterium longum",
    "title": "Methylobacterium longum",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022179385.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00388925",
        "wgs_master": "BPQS00000000.1",
        "refseq_category": "reference genome",
        "taxid": "767694",
        "species_taxid": "767694",
        "organism_name": "Methylobacterium longum",
        "infraspecific_name": "strain=DSM 23933",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/08",
        "asm_name": "ASM2217938v1",
        "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University",
        "gbrs_paired_asm": "GCA_022179385.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/179/385/GCF_022179385.1_ASM2217938v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6606771",
        "genome_size_ungapped": "6606771",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "213",
        "contig_count": "213",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022179385.1-RS_2024_09_02",
        "annotation_date": "2024-09-02",
        "total_gene_count": "6463",
        "protein_coding_gene_count": "6168",
        "non_coding_gene_count": "67",
        "pubmed_id": "34737731"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-08",
    "dateModified": "2022-01-08",
    "datePublished": "2022-01-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylobacterium longum"
        ],
        "sample_taxid": [
            "767694"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.806 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6606771",
        "Number of Sequences": "213",
        "Longest Sequences (bp)": "398795",
        "N50 (bp)": "124885",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.3",
        "Number of CDSs": "6363",
        "Average Protein Length": "282.2",
        "Coding Ratio (%)": "81.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "57",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Methylobacterium longum",
                "strain": "strain=DSM 23933",
                "accession": "GCA_022179385.1",
                "taxid": 767694,
                "species_taxid": 767694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 2115,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Methylobacterium radiotolerans",
                "strain": "strain=NBRC 15690",
                "accession": "GCA_007991055.1",
                "taxid": 31998,
                "species_taxid": 31998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.8003,
                "matched_fragments": 1471,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium radiotolerans",
                "strain": "strain=JCM 2831",
                "accession": "GCA_000019725.1",
                "taxid": 31998,
                "species_taxid": 31998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.7879,
                "matched_fragments": 1498,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tardum",
                "strain": "strain=NBRC 103632",
                "accession": "GCA_022179585.1",
                "taxid": 374432,
                "species_taxid": 374432,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.3494,
                "matched_fragments": 1460,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium phyllosphaerae",
                "strain": "strain=CBMB27",
                "accession": "GCA_001936175.1",
                "taxid": 418223,
                "species_taxid": 418223,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.2464,
                "matched_fragments": 1412,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium phyllosphaerae",
                "strain": "strain=CBMB27",
                "accession": "GCA_900113465.1",
                "taxid": 418223,
                "species_taxid": 418223,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 87.2417,
                "matched_fragments": 1414,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium tardum",
                "strain": "strain=DSM 19566",
                "accession": "GCA_023546765.1",
                "taxid": 374432,
                "species_taxid": 374432,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.1705,
                "matched_fragments": 1514,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium phyllostachyos",
                "strain": "strain=BL47",
                "accession": "GCA_900103445.1",
                "taxid": 582672,
                "species_taxid": 582672,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1807,
                "matched_fragments": 1368,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium brachiatum",
                "strain": "strain=B0021",
                "accession": "GCA_020523825.1",
                "taxid": 269660,
                "species_taxid": 269660,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5457,
                "matched_fragments": 1387,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium mesophilicum",
                "strain": "strain=NBRC 15688",
                "accession": "GCA_022179445.1",
                "taxid": 39956,
                "species_taxid": 39956,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4645,
                "matched_fragments": 1349,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium pseudosasicola",
                "strain": "strain=BL36",
                "accession": "GCA_900114535.1",
                "taxid": 582667,
                "species_taxid": 582667,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.3424,
                "matched_fragments": 1383,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium aerolatum",
                "strain": "strain=DSM 19013",
                "accession": "GCA_022179085.1",
                "taxid": 418708,
                "species_taxid": 418708,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3385,
                "matched_fragments": 1031,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alsobacter soli",
                "strain": "strain=SH9",
                "accession": "GCA_003004785.1",
                "taxid": 2109933,
                "species_taxid": 2109933,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5603,
                "matched_fragments": 431,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alsobacter metallidurans",
                "strain": "strain=CGMCC 1.12214",
                "accession": "GCA_014636935.1",
                "taxid": 340221,
                "species_taxid": 340221,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4333,
                "matched_fragments": 420,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Jiella pacifica",
                "strain": "strain=40Bstr34",
                "accession": "GCA_010500815.1",
                "taxid": 2696469,
                "species_taxid": 2696469,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8791,
                "matched_fragments": 306,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nonomuraea spiralis",
                "strain": "strain=JCM 3286",
                "accession": "GCA_014648435.1",
                "taxid": 46182,
                "species_taxid": 46182,
                "relation_to_type": "type",
                "validated": true,
                "ani": 74.8423,
                "matched_fragments": 334,
                "total_fragments": 2118,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000364445.2",
                "gtdb_species": "s__Methylobacterium mesophilicum",
                "ani": 87.9588,
                "matched_fragments": 1544,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003096615.1",
                "gtdb_species": "s__Methylobacterium organophilum",
                "ani": 87.7969,
                "matched_fragments": 1517,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.99",
                "min_intra_species_ani": "98.85",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 18,
                "status": "-"
            },
            {
                "accession": "GCF_900112625.1",
                "gtdb_species": "s__Methylobacterium sp900112625",
                "ani": 87.6656,
                "matched_fragments": 1455,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "98.23",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_900103195.1",
                "gtdb_species": "s__Methylobacterium sp900103195",
                "ani": 87.3144,
                "matched_fragments": 1456,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.81",
                "min_intra_species_ani": "96.81",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014873335.1",
                "gtdb_species": "s__Methylobacterium sp014873335",
                "ani": 87.2355,
                "matched_fragments": 1463,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014138435.1",
                "gtdb_species": "s__Methylobacterium fujisawaense",
                "ani": 87.2013,
                "matched_fragments": 1422,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.73",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 12,
                "status": "-"
            },
            {
                "accession": "GCF_017833295.1",
                "gtdb_species": "s__Methylobacterium sp017833295",
                "ani": 87.0166,
                "matched_fragments": 1484,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009806555.1",
                "gtdb_species": "s__Methylobacterium sp009806555",
                "ani": 86.7333,
                "matched_fragments": 1392,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900103445.1",
                "gtdb_species": "s__Methylobacterium phyllostachyos",
                "ani": 86.1858,
                "matched_fragments": 1368,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003697185.1",
                "gtdb_species": "s__Methylobacterium brachiatum",
                "ani": 85.6128,
                "matched_fragments": 1390,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.08",
                "min_intra_species_ani": "95.77",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900114535.1",
                "gtdb_species": "s__Methylobacterium pseudosasicola",
                "ani": 85.3195,
                "matched_fragments": 1384,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001455965.1",
                "gtdb_species": "s__Methylobacterium sp001455965",
                "ani": 85.0444,
                "matched_fragments": 1319,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902141855.1",
                "gtdb_species": "s__Methylobacterium dankookense",
                "ani": 82.2213,
                "matched_fragments": 1103,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008040045.1",
                "gtdb_species": "s__Methylobacterium sp008040045",
                "ani": 81.8864,
                "matched_fragments": 1051,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.25",
                "min_intra_species_ani": "98.17",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_003173715.1",
                "gtdb_species": "s__Methylobacterium durans",
                "ani": 81.1628,
                "matched_fragments": 984,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016869215.1",
                "gtdb_species": "s__Z2-YC6860 sp016869215",
                "ani": 76.8881,
                "matched_fragments": 299,
                "total_fragments": 2118,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Z2-YC6860",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.014,
        "cell_length": 0.425,
        "doubling_h": 0.623,
        "growth_tmp": 28.0,
        "optimum_tmp": 27.246,
        "optimum_ph": 6.721,
        "genome_size": 6004081.51,
        "gc_content": 68.2,
        "coding_genes": 6044.758,
        "rRNA16S_genes": 6.142,
        "tRNA_genes": 64.375,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.833,
        "range_salinity": 0.333,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.935,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.064,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Methylobacterium",
        "longum"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}