{ "type": "genome", "identifier": "GCF_022179465.1", "organism": "Methylobacterium organophilum", "title": "Methylobacterium organophilum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022179465.1", "bioproject": "PRJNA224116", "biosample": "SAMD00388930", "wgs_master": "BPQV00000000.1", "refseq_category": "na", "taxid": "410", "species_taxid": "410", "organism_name": "Methylobacterium organophilum", "infraspecific_name": "strain=NBRC 15689", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/08", "asm_name": "ASM2217946v1", "asm_submitter": "Microbiology, Graduate School of Medical Sciences, Kyushu University", "gbrs_paired_asm": "GCA_022179465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/179/465/GCF_022179465.1_ASM2217946v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5070401", "genome_size_ungapped": "5070401", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "114", "contig_count": "114", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022179465.1-RS_2024_09_02", "annotation_date": "2024-09-02", "total_gene_count": "4797", "protein_coding_gene_count": "4667", "non_coding_gene_count": "55", "pubmed_id": "34737731" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-08", "dateModified": "2022-01-08", "datePublished": "2022-01-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium organophilum" ], "sample_taxid": [ "410" ], "sample_host_organism": [], 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"status": "below_threshold" }, { "organism_name": "Methylobacterium jeotgali", "strain": "strain=LMG 23639", "accession": "GCA_022179345.1", "taxid": 381630, "species_taxid": 381630, "relation_to_type": "type", "validated": true, "ani": 82.6168, "matched_fragments": 891, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=DSM 24028", "accession": "GCA_022179505.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 82.4469, "matched_fragments": 927, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oxalidis", "strain": "strain=NBRC 107715", "accession": "GCA_007992195.1", "taxid": 944322, "species_taxid": 944322, "relation_to_type": "type", "validated": true, "ani": 82.4442, "matched_fragments": 942, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiodurans", "strain": "strain=17Sr1-43", "accession": "GCA_003173735.1", "taxid": 2202828, "species_taxid": 2202828, "relation_to_type": "type", "validated": true, "ani": 82.4095, "matched_fragments": 945, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium gregans", "strain": "strain=NBRC 103626", "accession": "GCA_022179245.1", "taxid": 374424, "species_taxid": 374424, "relation_to_type": "type", "validated": true, "ani": 82.3998, "matched_fragments": 910, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium segetis", "strain": "strain=17J42-1", "accession": "GCA_004348265.1", "taxid": 2488750, "species_taxid": 2488750, "relation_to_type": "type", "validated": true, "ani": 82.3943, "matched_fragments": 929, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium soli", "strain": "strain=KCTC 22810", "accession": "GCA_022179555.1", "taxid": 553447, "species_taxid": 553447, "relation_to_type": "type", "validated": true, "ani": 81.9647, "matched_fragments": 757, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium brachiatum", "strain": "strain=B0021", "accession": "GCA_020523825.1", "taxid": 269660, "species_taxid": 269660, "relation_to_type": "type", "validated": true, "ani": 81.6291, "matched_fragments": 946, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014845115.1", "gtdb_species": "s__Methylobacterium zatmanii", "ani": 84.987, "matched_fragments": 1009, "total_fragments": 1668, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", 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