{ "type": "genome", "identifier": "GCF_022200785.1", "organism": "Pedobacter mucosus", "title": "Pedobacter mucosus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wuhan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022200785.1", "bioproject": "PRJNA224116", "biosample": "SAMN23133327", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2895286", "species_taxid": "2895286", "organism_name": "Pedobacter mucosus", "infraspecific_name": "strain=Q8-18", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/11", "asm_name": "ASM2220078v1", "asm_submitter": "Wuhan University", "gbrs_paired_asm": "GCA_022200785.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/200/785/GCF_022200785.1_ASM2220078v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4929029", "genome_size_ungapped": "4929029", "gc_percent": "35.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022200785.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "4162", "protein_coding_gene_count": "4083", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-11", "dateModified": "2022-02-11", "datePublished": "2022-02-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Pedobacter mucosus" ], "sample_taxid": [ "2895286" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Svalbard" ], "sample_host_location_id": [], "data_size": "1.378 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4929029", "Number of Sequences": "1", "Longest Sequences (bp)": "4929029", "N50 (bp)": "4929029", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.5", "Number of CDSs": "4083", "Average Protein Length": "344.5", "Coding Ratio (%)": "85.6", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pedobacter mucosus", "strain": "strain=Q8-18", "accession": "GCA_022200785.1", "taxid": 2895286, "species_taxid": 2895286, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1643, "total_fragments": 1643, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pedobacter fastidiosus", "strain": "strain=CCM 8938", "accession": "GCA_014306625.1", "taxid": 2765361, "species_taxid": 2765361, "relation_to_type": "type", "validated": true, "ani": 80.4654, "matched_fragments": 734, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter frigidisoli", "strain": "strain=RP-3-11", "accession": "GCA_004331675.1", "taxid": 2530455, "species_taxid": 2530455, "relation_to_type": "type", "validated": true, "ani": 80.1185, "matched_fragments": 671, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter nototheniae", "strain": "strain=36B243", "accession": "GCA_004335085.1", "taxid": 2488994, "species_taxid": 2488994, "relation_to_type": "type", "validated": true, "ani": 79.5233, "matched_fragments": 555, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrodurus", "strain": "strain=RP-3-21", "accession": "GCA_004331735.1", "taxid": 2530456, "species_taxid": 2530456, "relation_to_type": "type", "validated": true, "ani": 79.44, "matched_fragments": 626, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter ginsenosidimutans", "strain": "strain=KACC 14530", "accession": "GCA_001442625.1", "taxid": 687842, "species_taxid": 687842, "relation_to_type": "type", "validated": true, "ani": 79.4367, "matched_fragments": 618, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter kyonggii", "strain": "strain=K-4-11-1", "accession": "GCA_004310665.1", "taxid": 1926871, "species_taxid": 1926871, "relation_to_type": "type", "validated": true, "ani": 79.4248, "matched_fragments": 628, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter petrophilus", "strain": "strain=LMG 29686", "accession": "GCA_009674725.1", "taxid": 1908241, 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true, "ani": 79.3434, "matched_fragments": 583, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter alluvionis", "strain": "strain=DSM 19624", "accession": "GCA_003664035.1", "taxid": 475253, "species_taxid": 475253, "relation_to_type": "type", "validated": true, "ani": 79.3251, "matched_fragments": 583, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter chinensis", "strain": "strain=JDX94", "accession": "GCA_003339865.1", "taxid": 2282421, "species_taxid": 2282421, "relation_to_type": "type", "validated": true, "ani": 79.2999, "matched_fragments": 638, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrotolerans", "strain": "strain=CGMCC 1.15644", "accession": "GCA_014643495.1", "taxid": 1843235, "species_taxid": 1843235, "relation_to_type": "type", "validated": true, "ani": 79.2608, "matched_fragments": 574, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter psychrotolerans", "strain": "strain=DSM 103236", "accession": "GCA_004340665.1", "taxid": 1843235, "species_taxid": 1843235, "relation_to_type": "type", "validated": true, "ani": 79.2158, "matched_fragments": 577, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter changchengzhani", "strain": "strain=E01020", "accession": "GCA_004354365.1", "taxid": 2529274, "species_taxid": 2529274, "relation_to_type": "type", "validated": true, "ani": 78.9703, "matched_fragments": 413, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter aquae", "strain": "strain=CJ43", "accession": "GCA_008195825.1", "taxid": 2605747, "species_taxid": 2605747, "relation_to_type": "type", "validated": true, "ani": 76.9934, "matched_fragments": 130, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 76.1385, "matched_fragments": 50, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pedobacter segetis", "strain": "strain=SD-b", "accession": "GCA_016623585.1", "taxid": 2793069, "species_taxid": 2793069, "relation_to_type": "type", "validated": true, "ani": 75.9748, "matched_fragments": 86, "total_fragments": 1643, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014306625.1", "gtdb_species": "s__Pedobacter sp014306625", "ani": 80.4552, "matched_fragments": 736, "total_fragments": 1643, "gtdb_taxonomy": 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