{
    "type": "genome",
    "identifier": "GCF_022227625.1",
    "organism": "Ectothiorhodospira variabilis",
    "title": "Ectothiorhodospira variabilis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bellevue University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022227625.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN23375619",
        "wgs_master": "JAJNAO000000000.1",
        "refseq_category": "reference genome",
        "taxid": "505694",
        "species_taxid": "505694",
        "organism_name": "Ectothiorhodospira variabilis",
        "infraspecific_name": "strain=WN 22",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/15",
        "asm_name": "ASM2222762v1",
        "asm_submitter": "Bellevue University",
        "gbrs_paired_asm": "GCA_022227625.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/227/625/GCF_022227625.1_ASM2222762v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3413657",
        "genome_size_ungapped": "3413657",
        "gc_percent": "63.000000",
        "replicon_count": "0",
        "scaffold_count": "74",
        "contig_count": "74",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022227625.1-RS_2024_03_27",
        "annotation_date": "2024-03-27",
        "total_gene_count": "3205",
        "protein_coding_gene_count": "3106",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-15",
    "dateModified": "2022-02-15",
    "datePublished": "2022-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ectothiorhodospira variabilis"
        ],
        "sample_taxid": [
            "505694"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Egypt: Wadi Natrun"
        ],
        "sample_host_location_id": [],
        "data_size": "0.955 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3413657",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "562171",
        "N50 (bp)": "173955",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "63.0",
        "Number of CDSs": "3134",
        "Average Protein Length": "322.9",
        "Coding Ratio (%)": "88.9",
        "Number of rRNAs": "2",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Ectothiorhodospira marina",
                "strain": "strain=DSM 241",
                "accession": "GCA_900109495.1",
                "taxid": 1396821,
                "species_taxid": 1396821,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.5915,
                "matched_fragments": 841,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ectothiorhodospira magna",
                "strain": "strain=B7-7",
                "accession": "GCA_900110965.1",
                "taxid": 867345,
                "species_taxid": 867345,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1421,
                "matched_fragments": 450,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio sulfidiphilus",
                "strain": "strain=HL-EbGR7",
                "accession": "GCA_000021985.1",
                "taxid": 1033854,
                "species_taxid": 1033854,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.574,
                "matched_fragments": 381,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio denitrificans",
                "strain": "strain=ALJD",
                "accession": "GCA_002000365.1",
                "taxid": 108003,
                "species_taxid": 108003,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4511,
                "matched_fragments": 310,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalkalivibrio thiocyanodenitrificans",
                "strain": "strain=ARhD 1",
                "accession": "GCA_000378965.1",
                "taxid": 243063,
                "species_taxid": 243063,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2745,
                "matched_fragments": 318,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thioalbus denitrificans",
                "strain": "strain=DSM 26407",
                "accession": "GCA_003337735.1",
                "taxid": 547122,
                "species_taxid": 547122,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3458,
                "matched_fragments": 213,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas thermotolerans",
                "strain": "strain=DSM 14292",
                "accession": "GCA_000364625.1",
                "taxid": 157784,
                "species_taxid": 157784,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5933,
                "matched_fragments": 133,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ectothiorhodosinus mongolicus",
                "strain": "strain=DSM 15479",
                "accession": "GCA_022406875.1",
                "taxid": 233100,
                "species_taxid": 233100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5388,
                "matched_fragments": 108,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ectothiorhodosinus mongolicus",
                "strain": "strain=M9",
                "accession": "GCA_900156225.1",
                "taxid": 233100,
                "species_taxid": 233100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.4952,
                "matched_fragments": 109,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas lalucatii",
                "strain": "strain=R1b54",
                "accession": "GCA_018398425.1",
                "taxid": 1424203,
                "species_taxid": 1424203,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3748,
                "matched_fragments": 138,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas benzenivorans",
                "strain": "strain=DSM 8628",
                "accession": "GCA_900100495.1",
                "taxid": 556533,
                "species_taxid": 556533,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3645,
                "matched_fragments": 134,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas indica",
                "strain": "strain=NBRC 103045",
                "accession": "GCA_002091635.1",
                "taxid": 137658,
                "species_taxid": 137658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3394,
                "matched_fragments": 97,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas yangonensis",
                "strain": "strain=MY50",
                "accession": "GCA_009932725.1",
                "taxid": 2579922,
                "species_taxid": 2579922,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2901,
                "matched_fragments": 105,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudomonas cavernae",
                "strain": "strain=K2W31S-8",
                "accession": "GCA_003595175.1",
                "taxid": 2320867,
                "species_taxid": 2320867,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2108,
                "matched_fragments": 107,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Spiribacter curvatus",
                "strain": "strain=UAH-SP71",
                "accession": "GCA_000485905.1",
                "taxid": 1335757,
                "species_taxid": 1335757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0056,
                "matched_fragments": 57,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Stutzerimonas frequens",
                "strain": "strain=DNSP21",
                "accession": "GCA_002890935.1",
                "taxid": 2968969,
                "species_taxid": 2968969,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0027,
                "matched_fragments": 115,
                "total_fragments": 1107,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000633935.1",
                "gtdb_species": "s__Ectothiorhodospira haloalkaliphila",
                "ani": 98.555,
                "matched_fragments": 993,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.86",
                "min_intra_species_ani": "99.86",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001632845.1",
                "gtdb_species": "s__Ectothiorhodospira sp001632845",
                "ani": 91.8003,
                "matched_fragments": 951,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900109495.1",
                "gtdb_species": "s__Ectothiorhodospira marina",
                "ani": 87.585,
                "matched_fragments": 842,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016584105.1",
                "gtdb_species": "s__Ectothiorhodospira shaposhnikovii",
                "ani": 80.8024,
                "matched_fragments": 571,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000225005.1",
                "gtdb_species": "s__Ectothiorhodospira sp000225005",
                "ani": 80.7711,
                "matched_fragments": 553,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900114895.1",
                "gtdb_species": "s__Ectothiorhodospira mobilis_A",
                "ani": 80.6977,
                "matched_fragments": 551,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_016584115.1",
                "gtdb_species": "s__Ectothiorhodospira mobilis",
                "ani": 80.5139,
                "matched_fragments": 557,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Ectothiorhodospira",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000021985.1",
                "gtdb_species": "s__Thioalkalivibrio_A sulfidiphilus",
                "ani": 79.5581,
                "matched_fragments": 383,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Thioalkalivibrio_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000364625.1",
                "gtdb_species": "s__Pseudomonas_E thermotolerans",
                "ani": 76.6057,
                "matched_fragments": 132,
                "total_fragments": 1107,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.25",
                "min_intra_species_ani": "99.24",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.13,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 32.5,
        "optimum_ph": 9.25,
        "genome_size": 2995143.5,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": null,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Ectothiorhodospira",
        "variabilis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}