{ "type": "genome", "identifier": "GCF_022230925.1", "organism": "Micromonospora alfalfae", "title": "Micromonospora alfalfae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad de Salamanca", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022230925.1", "bioproject": "PRJNA224116", "biosample": "SAMN25050239", "wgs_master": "JAKKFH000000000.1", "refseq_category": "reference genome", "taxid": "2911212", "species_taxid": "2911212", "organism_name": "Micromonospora alfalfae", "infraspecific_name": "strain=MED01", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/15", "asm_name": "ASM2223092v1", "asm_submitter": "Universidad de Salamanca", "gbrs_paired_asm": "GCA_022230925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/230/925/GCF_022230925.1_ASM2223092v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7558670", "genome_size_ungapped": "7558670", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022230925.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "7115", "protein_coding_gene_count": "6979", "non_coding_gene_count": "59", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-15", "dateModified": "2022-02-15", "datePublished": "2022-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Micromonospora alfalfae" ], "sample_taxid": [ "2911212" ], "sample_host_organism": [ "Medicago" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "2.034 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": 28.0, "max": 28.0 }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7558670", "Number of Sequences": "63", "Longest Sequences (bp)": "632772", "N50 (bp)": "232044", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.8", "Number of CDSs": "7126", "Average Protein Length": "315.1", "Coding Ratio (%)": "89.1", "Number of rRNAs": "4", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 95.0748, "matched_fragments": 2077, "total_fragments": 2488, 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