{ "type": "genome", "identifier": "GCF_022267315.1", "organism": "Maribellus maritimus", "title": "Maribellus maritimus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Univerity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022267315.1", "bioproject": "PRJNA224116", "biosample": "SAMN20844868", "wgs_master": "JAIKLE000000000.1", "refseq_category": "reference genome", "taxid": "2870838", "species_taxid": "2870838", "organism_name": "Maribellus maritimus", "infraspecific_name": "strain=5E3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/16", "asm_name": "ASM2226731v1", "asm_submitter": "Shandong Univerity at Weihai", "gbrs_paired_asm": "GCA_022267315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/267/315/GCF_022267315.1_ASM2226731v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7334083", "genome_size_ungapped": "7334083", "gc_percent": "38.000000", "replicon_count": "0", "scaffold_count": "201", "contig_count": "201", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022267315.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "5971", "protein_coding_gene_count": "5890", "non_coding_gene_count": "50", "pubmed_id": "34931269" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-16", "dateModified": "2022-02-16", "datePublished": "2022-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Maribellus maritimus" ], "sample_taxid": [ "2870838" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiaoshi Island, Weihai" ], "sample_host_location_id": [], "data_size": "2.075 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7334083", "Number of Sequences": "201", "Longest Sequences (bp)": "510519", "N50 (bp)": "157911", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.9", "Number of CDSs": "5761", "Average Protein Length": "372.6", "Coding Ratio (%)": "87.8", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Maribellus maritimus", "strain": "strain=5E3", "accession": "GCA_022267315.1", "taxid": 2870838, "species_taxid": 2870838, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2356, "total_fragments": 2363, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Maribellus comscasis", "strain": "strain=WC007", "accession": "GCA_009762775.1", "taxid": 2681766, "species_taxid": 2681766, "relation_to_type": "type", "validated": true, "ani": 93.1078, "matched_fragments": 1919, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium orientale", "strain": "strain=DSM 25947", "accession": "GCA_900111425.1", "taxid": 1168034, "species_taxid": 1168034, "relation_to_type": "type", "validated": true, "ani": 77.2331, "matched_fragments": 235, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium sediminis", "strain": "strain=JN14CK-3", "accession": "GCA_000949475.1", "taxid": 1544798, "species_taxid": 1544798, "relation_to_type": "type", "validated": true, "ani": 77.0965, "matched_fragments": 237, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium halophilum", "strain": "strain=M1", "accession": "GCA_010448835.1", "taxid": 2706887, "species_taxid": 2706887, "relation_to_type": "type", "validated": true, "ani": 76.9944, "matched_fragments": 254, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribellus sediminis", "strain": "strain=Y2-1-60", "accession": "GCA_011799805.1", "taxid": 2696285, "species_taxid": 2696285, "relation_to_type": "type", "validated": true, "ani": 76.9752, "matched_fragments": 236, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Draconibacterium mangrovi", "strain": "strain=GM2-18", "accession": "GCA_010586825.1", "taxid": 2697469, "species_taxid": 2697469, "relation_to_type": "type", "validated": true, "ani": 76.7602, "matched_fragments": 270, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maribellus luteus", "strain": "strain=XSD2", "accession": "GCA_003576475.1", "taxid": 2305463, "species_taxid": 2305463, "relation_to_type": "type", "validated": true, "ani": 76.7097, "matched_fragments": 230, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniphaga sediminis", "strain": "strain=SY21", "accession": "GCA_003573545.1", "taxid": 1628158, "species_taxid": 1628158, "relation_to_type": "type", "validated": true, "ani": 76.688, "matched_fragments": 222, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mangrovibacterium diazotrophicum", "strain": "strain=DSM 27148", "accession": "GCA_003610535.1", "taxid": 1261403, "species_taxid": 1261403, "relation_to_type": "type", "validated": true, "ani": 75.7976, "matched_fragments": 81, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Carboxylicivirga linearis", "strain": "strain=FB218", "accession": "GCA_018271995.1", "taxid": 1628157, "species_taxid": 1628157, "relation_to_type": "type", "validated": true, "ani": 75.1756, "matched_fragments": 54, "total_fragments": 2363, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009762775.1", "gtdb_species": "s__Draconibacterium comscasis", "ani": 93.1124, "matched_fragments": 1919, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016931875.1", "gtdb_species": "s__Draconibacterium sp016931875", "ani": 79.0329, "matched_fragments": 430, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000626635.1", "gtdb_species": "s__Draconibacterium orientale", "ani": 77.1964, "matched_fragments": 234, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000949475.1", "gtdb_species": "s__Draconibacterium sediminis", "ani": 77.0959, "matched_fragments": 237, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010448835.1", "gtdb_species": "s__Draconibacterium halophilum", "ani": 76.9784, "matched_fragments": 254, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011799805.1", "gtdb_species": "s__Draconibacterium sp011799805", "ani": 76.9711, "matched_fragments": 236, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.71", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_011620585.1", "gtdb_species": "s__Draconibacterium sp011620585", "ani": 76.8116, "matched_fragments": 180, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003506435.1", "gtdb_species": "s__GWE2-42-39 sp003506435", "ani": 76.7925, "matched_fragments": 95, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__GWE2-42-39", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.98", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_016705335.1", "gtdb_species": "s__Draconibacterium sp016705335", "ani": 76.7589, "matched_fragments": 224, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003576475.1", "gtdb_species": "s__Draconibacterium luteum", "ani": 76.7022, "matched_fragments": 230, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003573545.1", "gtdb_species": "s__Mariniphaga sediminis", "ani": 76.7015, "matched_fragments": 222, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Mariniphaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018648265.1", "gtdb_species": "s__Draconibacterium sp018648265", "ani": 76.6579, "matched_fragments": 296, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_015493625.1", "gtdb_species": "s__Draconibacterium sp015493625", "ani": 76.5536, "matched_fragments": 131, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013203755.1", "gtdb_species": "s__Draconibacterium sp013203755", "ani": 76.1244, "matched_fragments": 200, "total_fragments": 2363, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prolixibacteraceae;g__Draconibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Maribellus", "maritimus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }