{ "type": "genome", "identifier": "GCF_022271405.1", "organism": "Rhodopseudomonas infernalis", "title": "Rhodopseudomonas infernalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bellevue University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022271405.1", "bioproject": "PRJNA224116", "biosample": "SAMN23374548", "wgs_master": "JAJNAL000000000.1", "refseq_category": "reference genome", "taxid": "2897386", "species_taxid": "2897386", "organism_name": "Rhodopseudomonas infernalis", "infraspecific_name": "strain=HC1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/16", "asm_name": "ASM2227140v1", "asm_submitter": "Bellevue University", "gbrs_paired_asm": "GCA_022271405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/271/405/GCF_022271405.1_ASM2227140v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5496629", "genome_size_ungapped": "5496629", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022271405.1-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "5068", "protein_coding_gene_count": "4981", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-16", "dateModified": "2022-02-16", "datePublished": "2022-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodopseudomonas infernalis" ], "sample_taxid": [ "2897386" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Omaha, Nebraska" ], "sample_host_location_id": [], "data_size": "1.513 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5496629", "Number of Sequences": "87", "Longest Sequences (bp)": "392370", "N50 (bp)": "113479", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.3", "Number of CDSs": "5028", "Average Protein Length": "314.3", "Coding Ratio (%)": "86.3", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Rhodopseudomonas pseudopalustris", "strain": "strain=DSM 123", "accession": "GCA_900110435.1", "taxid": 1513892, "species_taxid": 1513892, "relation_to_type": "type", "validated": true, "ani": 85.7152, "matched_fragments": 1226, "total_fragments": 1792, 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"status": "below_threshold" }, { "organism_name": "Rhodopseudomonas faecalis", "strain": "strain=JCM 11668", "accession": "GCA_003217325.1", "taxid": 99655, "species_taxid": 99655, "relation_to_type": "type", "validated": true, "ani": 81.581, "matched_fragments": 850, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium ivorense", "strain": "strain=CI-1B", "accession": "GCA_900696085.2", "taxid": 2511166, "species_taxid": 2511166, "relation_to_type": "type", "validated": true, "ani": 81.3315, "matched_fragments": 1005, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium elkanii", "strain": "strain=USDA 76", "accession": "GCA_000379145.1", "taxid": 29448, "species_taxid": 29448, "relation_to_type": "type", "validated": true, "ani": 81.1923, "matched_fragments": 988, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium viridifuturi", "strain": "strain=SEMIA 690", "accession": "GCA_001238275.1", "taxid": 1654716, "species_taxid": 1654716, "relation_to_type": "type", "validated": true, "ani": 81.1456, "matched_fragments": 993, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 81.1437, "matched_fragments": 983, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium oropedii", "strain": "strain=Pear76", "accession": "GCA_020889685.1", "taxid": 1571201, "species_taxid": 1571201, "relation_to_type": "type", "validated": true, "ani": 81.0925, "matched_fragments": 933, "total_fragments": 1792, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium acaciae", "strain": 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