{ "type": "genome", "identifier": "GCF_022321465.1", "organism": "Ruegeria alba", "title": "Ruegeria alba", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Guangdong Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022321465.1", "bioproject": "PRJNA224116", "biosample": "SAMN25721888", "wgs_master": "JAKOEM000000000.1", "refseq_category": "reference genome", "taxid": "2916756", "species_taxid": "2916756", "organism_name": "Ruegeria alba", "infraspecific_name": "strain=1NDH52C", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/17", "asm_name": "ASM2232146v1", "asm_submitter": "Guangdong Academy of Sciences", "gbrs_paired_asm": "GCA_022321465.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/321/465/GCF_022321465.1_ASM2232146v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4455020", "genome_size_ungapped": "4455020", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "73", "contig_count": "73", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022321465.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "4393", "protein_coding_gene_count": "4299", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-17", "dateModified": "2022-02-17", "datePublished": "2022-02-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Ruegeria alba" ], "sample_taxid": [ "2916756" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Qiao Island" ], "sample_host_location_id": [], "data_size": "1.240 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4455020", "Number of Sequences": "73", "Longest Sequences (bp)": "769036", "N50 (bp)": "154623", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.6", "Number of CDSs": "4298", "Average Protein Length": "311.1", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruegeria pomeroyi", "strain": "strain=DSS-3", "accession": "GCA_000011965.2", "taxid": 89184, "species_taxid": 89184, "relation_to_type": "suspected-type", "validated": true, "ani": 91.2966, "matched_fragments": 1190, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marina", "strain": "strain=CGMCC 1.9108", "accession": "GCA_900101475.1", "taxid": 639004, "species_taxid": 639004, "relation_to_type": "type", "validated": true, "ani": 84.3035, "matched_fragments": 991, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 81.2381, "matched_fragments": 774, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria intermedia", "strain": "strain=DSM 29341", "accession": "GCA_900129345.1", "taxid": 996115, "species_taxid": 996115, "relation_to_type": "type", "validated": true, "ani": 81.2297, "matched_fragments": 762, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria 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"accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 79.5896, "matched_fragments": 606, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leisingera methylohalidivorans", "strain": "strain=DSM 14336; MB2", "accession": "GCA_000511355.1", "taxid": 133924, "species_taxid": 133924, "relation_to_type": "type", "validated": true, "ani": 79.2537, "matched_fragments": 662, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.5963, "matched_fragments": 466, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseibacterium elongatum", "strain": "strain=DFL-43", "accession": "GCA_000590925.1", "taxid": 159346, "species_taxid": 159346, "relation_to_type": "type", "validated": true, "ani": 78.3236, "matched_fragments": 431, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 78.2685, "matched_fragments": 470, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alexandriicola marinus", "strain": "strain=LZ-14", "accession": "GCA_004000435.1", "taxid": 2081710, "species_taxid": 2081710, "relation_to_type": "type", "validated": true, "ani": 77.8814, "matched_fragments": 383, "total_fragments": 1447, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": 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"min_intra_species_af": "0.98", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_010500245.1", "gtdb_species": "s__Ruegeria_B sp010500245", "ani": 86.7796, "matched_fragments": 1103, "total_fragments": 1447, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101475.1", "gtdb_species": "s__Ruegeria_B marina", "ani": 84.3176, "matched_fragments": 991, "total_fragments": 1447, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.111, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ruegeria", "alba" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }