{ "type": "genome", "identifier": "GCF_022352055.1", "organism": "Cohnella mopanensis", "title": "Cohnella mopanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yunnan Institute of Microbiology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022352055.1", "bioproject": "PRJNA224116", "biosample": "SAMN25146042", "wgs_master": "JAKRWM000000000.1", "refseq_category": "reference genome", "taxid": "2911966", "species_taxid": "2911966", "organism_name": "Cohnella mopanensis", "infraspecific_name": "strain=YIM B01951", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/21", "asm_name": "ASM2235205v1", "asm_submitter": "Yunnan Institute of Microbiology", "gbrs_paired_asm": "GCA_022352055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/352/055/GCF_022352055.1_ASM2235205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5812450", "genome_size_ungapped": "5812450", "gc_percent": "49.000000", "replicon_count": "0", "scaffold_count": "57", "contig_count": "57", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022352055.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "5295", "protein_coding_gene_count": "5194", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-21", "dateModified": "2022-02-21", "datePublished": "2022-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Cohnella mopanensis" ], "sample_taxid": [ "2911966" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.655 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5812450", "Number of Sequences": "57", "Longest Sequences (bp)": "895296", "N50 (bp)": "428945", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.2", "Number of CDSs": "5251", "Average Protein Length": "326.7", "Coding Ratio (%)": "88.6", "Number of rRNAs": "1", "Number of tRNAs": "52", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Cohnella cholangitidis", "strain": "strain=1605-214", "accession": "GCA_014107495.1", "taxid": 2598458, "species_taxid": 2598458, "relation_to_type": "type", "validated": true, "ani": 83.3783, "matched_fragments": 1239, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella herbarum", "strain": "strain=MFER-1", "accession": "GCA_012849095.1", "taxid": 2728023, "species_taxid": 2728023, "relation_to_type": "type", "validated": true, "ani": 81.5861, "matched_fragments": 990, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella terricola", "strain": "strain=G13", "accession": "GCA_007786475.1", "taxid": 1289167, "species_taxid": 1289167, "relation_to_type": "type", "validated": true, "ani": 80.1382, "matched_fragments": 549, "total_fragments": 1915, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cohnella luojiensis", "strain": "strain=CCTCC AB 208254", "accession": "GCA_004564235.1", "taxid": 652876, "species_taxid": 652876, "relation_to_type": "type", "validated": true, "ani": 80.0674, "matched_fragments": 574, "total_fragments": 1915, "ani_threshold": 95, "status": 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004564235.1", "gtdb_species": "s__Cohnella luojiensis", "ani": 80.0766, "matched_fragments": 573, "total_fragments": 1915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003628305.1", "gtdb_species": "s__Cohnella endophytica", "ani": 79.6466, "matched_fragments": 623, "total_fragments": 1915, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Cohnella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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