{ "type": "genome", "identifier": "GCF_022352215.1", "organism": "Flavihumibacter cheonanensis", "title": "Flavihumibacter cheonanensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022352215.1", "bioproject": "PRJNA224116", "biosample": "SAMN25827132", "wgs_master": "JAKRWF000000000.1", "refseq_category": "reference genome", "taxid": "1442385", "species_taxid": "1442385", "organism_name": "Flavihumibacter cheonanensis", "infraspecific_name": "strain=WS16", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/21", "asm_name": "ASM2235221v1", "asm_submitter": "Shandong University of Technology", "gbrs_paired_asm": "GCA_022352215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/352/215/GCF_022352215.1_ASM2235221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4847828", "genome_size_ungapped": "4847828", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "241", "contig_count": "241", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022352215.1-RS_2024_08_04", "annotation_date": "2024-08-04", "total_gene_count": "4390", "protein_coding_gene_count": "4295", "non_coding_gene_count": "51", "pubmed_id": "24994772" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-21", "dateModified": "2022-02-21", "datePublished": "2022-02-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavihumibacter cheonanensis" ], "sample_taxid": [ "1442385" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Cheonan" ], "sample_host_location_id": [], "data_size": "1.380 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4847828", "Number of Sequences": "241", "Longest Sequences (bp)": "2097521", "N50 (bp)": "1059549", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.1", "Number of CDSs": "4145", "Average Protein Length": "354.5", "Coding Ratio (%)": "90.9", "Number of rRNAs": "3", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavihumibacter cheonanensis", "strain": "strain=WS16", "accession": "GCA_022352215.1", "taxid": 1442385, "species_taxid": 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"matched_fragments": 106, "total_fragments": 1584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudobacter ginsenosidimutans", "strain": "strain=Gsoil 221", "accession": "GCA_007970185.1", "taxid": 661488, "species_taxid": 661488, "relation_to_type": "type", "validated": true, "ani": 76.4097, "matched_fragments": 93, "total_fragments": 1584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium salmoneum", "strain": "strain=NBRC 103935", "accession": "GCA_000511175.1", "taxid": 426421, "species_taxid": 426421, "relation_to_type": "type", "validated": true, "ani": 76.2588, "matched_fragments": 65, "total_fragments": 1584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sediminibacterium roseum", "strain": "strain=SYL130", "accession": "GCA_009939005.1", "taxid": 1978412, "species_taxid": 1978412, "relation_to_type": "type", "validated": true, "ani": 76.1115, "matched_fragments": 54, 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"status": "below_threshold" }, { "organism_name": "Chitinophaga niabensis", "strain": "strain=DSM 24787", "accession": "GCA_900129465.1", "taxid": 536979, "species_taxid": 536979, "relation_to_type": "type", "validated": true, "ani": 75.7607, "matched_fragments": 59, "total_fragments": 1584, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chitinophaga arvensicola", "strain": "strain=DSM 3695", "accession": "GCA_900110835.1", "taxid": 29529, "species_taxid": 29529, "relation_to_type": "type", "validated": true, "ani": 75.5999, "matched_fragments": 68, "total_fragments": 1584, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018993145.1", "gtdb_species": "s__Flavihumibacter sp018993145", "ani": 91.8485, "matched_fragments": 585, "total_fragments": 1584, "gtdb_taxonomy": 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