{
    "type": "genome",
    "identifier": "GCF_022410465.1",
    "organism": "Christiangramia crocea",
    "title": "Christiangramia crocea",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Zhejiang University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022410465.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN24021757",
        "wgs_master": "JAJSON000000000.1",
        "refseq_category": "reference genome",
        "taxid": "2904124",
        "species_taxid": "2904124",
        "organism_name": "Christiangramia crocea",
        "infraspecific_name": "strain=YB25",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/28",
        "asm_name": "ASM2241046v1",
        "asm_submitter": "Zhejiang University",
        "gbrs_paired_asm": "GCA_022410465.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/410/465/GCF_022410465.1_ASM2241046v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3902243",
        "genome_size_ungapped": "3902243",
        "gc_percent": "39.500000",
        "replicon_count": "0",
        "scaffold_count": "32",
        "contig_count": "32",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022410465.1-RS_2024_04_15",
        "annotation_date": "2024-04-15",
        "total_gene_count": "3441",
        "protein_coding_gene_count": "3394",
        "non_coding_gene_count": "36",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-28",
    "dateModified": "2022-02-28",
    "datePublished": "2022-02-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Christiangramia crocea"
        ],
        "sample_taxid": [
            "2904124"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China:Zhejiang Zhoushan"
        ],
        "sample_host_location_id": [],
        "data_size": "1.107 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3902243",
        "Number of Sequences": "32",
        "Longest Sequences (bp)": "731960",
        "N50 (bp)": "183208",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.5",
        "Number of CDSs": "3358",
        "Average Protein Length": "347.8",
        "Coding Ratio (%)": "89.8",
        "Number of rRNAs": "3",
        "Number of tRNAs": "29",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gramella crocea",
                "strain": "strain=YB25",
                "accession": "GCA_022410465.1",
                "taxid": 2904124,
                "species_taxid": 2904124,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1279,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gramella gaetbulicola",
                "strain": "strain=DSM 23082",
                "accession": "GCA_003054225.1",
                "taxid": 703340,
                "species_taxid": 703340,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.605,
                "matched_fragments": 504,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella aestuarii",
                "strain": "strain=BS12",
                "accession": "GCA_009735585.1",
                "taxid": 1028746,
                "species_taxid": 1028746,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.395,
                "matched_fragments": 446,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella lutea",
                "strain": "strain=YJ019",
                "accession": "GCA_022489035.1",
                "taxid": 1607951,
                "species_taxid": 1607951,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3288,
                "matched_fragments": 447,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella sabulilitoris",
                "strain": "strain=HSMS-1",
                "accession": "GCA_007050985.1",
                "taxid": 2583991,
                "species_taxid": 2583991,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0626,
                "matched_fragments": 404,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella echinicola",
                "strain": "strain=DSM 19838",
                "accession": "GCA_000423065.1",
                "taxid": 279359,
                "species_taxid": 279359,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0472,
                "matched_fragments": 469,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella forsetii",
                "strain": "strain=CGMCC 1.15422",
                "accession": "GCA_014642775.1",
                "taxid": 411153,
                "species_taxid": 411153,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0453,
                "matched_fragments": 456,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella salexigens",
                "strain": "strain=LPB0144",
                "accession": "GCA_001889005.1",
                "taxid": 1913577,
                "species_taxid": 1913577,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9035,
                "matched_fragments": 377,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gramella portivictoriae",
                "strain": "strain=DSM 23547",
                "accession": "GCA_000423045.1",
                "taxid": 326069,
                "species_taxid": 326069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.2475,
                "matched_fragments": 310,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Salegentibacter tibetensis",
                "strain": "strain=JZCK2",
                "accession": "GCA_020164485.1",
                "taxid": 2873600,
                "species_taxid": 2873600,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4196,
                "matched_fragments": 199,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertkochia sediminum",
                "strain": "strain=1368",
                "accession": "GCA_016786255.1",
                "taxid": 2785326,
                "species_taxid": 2785326,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9165,
                "matched_fragments": 55,
                "total_fragments": 1283,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_004332155.1",
                "gtdb_species": "s__Gramella sp004332155",
                "ani": 82.1425,
                "matched_fragments": 752,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003054225.1",
                "gtdb_species": "s__Gramella gaetbulicola",
                "ani": 79.605,
                "matched_fragments": 504,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009735585.1",
                "gtdb_species": "s__Gramella aestuarii",
                "ani": 79.395,
                "matched_fragments": 446,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900105135.1",
                "gtdb_species": "s__Gramella sp900105135",
                "ani": 79.1465,
                "matched_fragments": 447,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009735695.1",
                "gtdb_species": "s__Gramella sp009735695",
                "ani": 79.1222,
                "matched_fragments": 447,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000060345.1",
                "gtdb_species": "s__Gramella forsetii",
                "ani": 79.0891,
                "matched_fragments": 463,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_007050985.1",
                "gtdb_species": "s__Gramella sabulilitoris",
                "ani": 79.0674,
                "matched_fragments": 403,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000423065.1",
                "gtdb_species": "s__Gramella echinicola",
                "ani": 79.0422,
                "matched_fragments": 469,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.44",
                "min_intra_species_ani": "97.44",
                "mean_intra_species_af": "0.87",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001889005.1",
                "gtdb_species": "s__Gramella salexigens",
                "ani": 78.9142,
                "matched_fragments": 376,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000423045.1",
                "gtdb_species": "s__Gramella portivictoriae",
                "ani": 78.2514,
                "matched_fragments": 309,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_006714895.1",
                "gtdb_species": "s__Gramella sp006714895",
                "ani": 78.2001,
                "matched_fragments": 333,
                "total_fragments": 1283,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Christiangramia",
        "crocea"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}