{
    "type": "genome",
    "identifier": "GCF_022427145.1",
    "organism": "Paenibacillus timonensis",
    "title": "Paenibacillus timonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shanghai Academy of Landscape Architecture Science and Planning",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022427145.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN26090078",
        "wgs_master": "JAKSXN000000000.1",
        "refseq_category": "reference genome",
        "taxid": "225915",
        "species_taxid": "225915",
        "organism_name": "Paenibacillus timonensis",
        "infraspecific_name": "strain=DSM 16943",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/02/28",
        "asm_name": "ASM2242714v1",
        "asm_submitter": "Shanghai Academy of Landscape Architecture Science and Planning",
        "gbrs_paired_asm": "GCA_022427145.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/427/145/GCF_022427145.1_ASM2242714v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5276805",
        "genome_size_ungapped": "5276805",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "179",
        "contig_count": "179",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022427145.1-RS_2024_08_29",
        "annotation_date": "2024-08-29",
        "total_gene_count": "4971",
        "protein_coding_gene_count": "4846",
        "non_coding_gene_count": "77",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-02-28",
    "dateModified": "2022-02-28",
    "datePublished": "2022-02-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Paenibacillus timonensis"
        ],
        "sample_taxid": [
            "225915"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "France: Hospital de la Timone"
        ],
        "sample_host_location_id": [],
        "data_size": "1.509 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5276805",
        "Number of Sequences": "179",
        "Longest Sequences (bp)": "187392",
        "N50 (bp)": "66737",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "4907",
        "Average Protein Length": "312.7",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "1",
        "Number of tRNAs": "67",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Paenibacillus timonensis",
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                "species_taxid": 225915,
                "relation_to_type": "type",
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                "status": "conclusive"
            },
            {
                "organism_name": "Paenibacillus rubinfantis",
                "strain": "strain=MT18",
                "accession": "GCA_001486505.1",
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                "species_taxid": 1720296,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus phocaensis",
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                "species_taxid": 1776378,
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                "ani": 87.0077,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus barengoltzii",
                "strain": "strain=NBRC 101215",
                "accession": "GCA_004000745.1",
                "taxid": 343517,
                "species_taxid": 343517,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1961,
                "matched_fragments": 1137,
                "total_fragments": 1681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus oralis",
                "strain": "strain=KCOM 3021",
                "accession": "GCA_003863965.1",
                "taxid": 2490856,
                "species_taxid": 2490856,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.2373,
                "matched_fragments": 823,
                "total_fragments": 1681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus macerans",
                "strain": "strain=ATCC 8244",
                "accession": "GCA_000746875.1",
                "taxid": 44252,
                "species_taxid": 44252,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.0919,
                "matched_fragments": 800,
                "total_fragments": 1681,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus brevis",
                "strain": "strain=MSJ-6",
                "accession": "GCA_018919145.1",
                "taxid": 2841508,
                "species_taxid": 2841508,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.805,
                "matched_fragments": 319,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus caui",
                "strain": "strain=81-11",
                "accession": "GCA_019904135.1",
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                "species_taxid": 2873927,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 241,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Paenibacillus darwinianus",
                "strain": "strain=Br",
                "accession": "GCA_000598065.1",
                "taxid": 1380763,
                "species_taxid": 1380763,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9151,
                "matched_fragments": 109,
                "total_fragments": 1681,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
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        },
        "gtdb_result": [
            {
                "accession": "GCA_900766135.1",
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                "matched_fragments": 1421,
                "total_fragments": 1681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_009725205.1",
                "gtdb_species": "s__Paenibacillus_A timonensis",
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                "matched_fragments": 1329,
                "total_fragments": 1681,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.34",
                "min_intra_species_ani": "98.12",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_900021165.1",
                "gtdb_species": "s__Paenibacillus_A phocaensis",
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                "matched_fragments": 1231,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
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                "mean_intra_species_ani": "100.00",
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                "mean_intra_species_af": "1.00",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000159955.1",
                "gtdb_species": "s__Paenibacillus_A sp000159955",
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                "matched_fragments": 1176,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.302,
        "cell_length": 0.301,
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        "genome_size": 6197949.921,
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        "rRNA16S_genes": 10.237,
        "tRNA_genes": 93.313,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.9,
        "thermophilic_range_tmp": 0.033,
        "psychrophilic_range_tmp": 0.066,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Paenibacillus",
        "timonensis"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}