{ "type": "genome", "identifier": "GCF_022488045.1", "organism": "Aestuariibaculum lutulentum", "title": "Aestuariibaculum lutulentum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "College of life sciences and medicine, Zhejiang University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022488045.1", "bioproject": "PRJNA224116", "biosample": "SAMN26244238", "wgs_master": "JAKVQD000000000.1", "refseq_category": "na", "taxid": "2920935", "species_taxid": "2920935", "organism_name": "Aestuariibaculum lutulentum", "infraspecific_name": "strain=L182", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/05", "asm_name": "ASM2248804v1", "asm_submitter": "College of life sciences and medicine, Zhejiang University of Technology", "gbrs_paired_asm": "GCA_022488045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/488/045/GCF_022488045.1_ASM2248804v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3861595", "genome_size_ungapped": "3861072", "gc_percent": "36.000000", "replicon_count": "0", "scaffold_count": "420", "contig_count": "420", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022488045.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3285", "protein_coding_gene_count": "3215", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-05", "dateModified": "2022-03-05", "datePublished": "2022-03-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariibaculum lutulentum" ], "sample_taxid": [ "2920935" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beihai City, Guangxi" ], "sample_host_location_id": [], "data_size": "1.094 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3861595", "Number of Sequences": "420", "Longest Sequences (bp)": "1610547", "N50 (bp)": "446351", "Gap Ratio (%)": "0.013544", "GCcontent (%)": "35.9", "Number of CDSs": "3167", "Average Protein Length": "358.8", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariibaculum marinum", "strain": "strain=IP7", "accession": "GCA_014596975.1", "taxid": 2683592, "species_taxid": 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"below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.8207, "matched_fragments": 301, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 77.7849, "matched_fragments": 320, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga algicola", "strain": "strain=Y03", "accession": "GCA_012910715.1", "taxid": 2729136, "species_taxid": 2729136, "relation_to_type": "type", "validated": true, "ani": 77.7275, "matched_fragments": 305, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium 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"GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 77.2578, "matched_fragments": 170, "total_fragments": 1240, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014596975.1", "gtdb_species": "s__Aestuariibaculum marinum", "ani": 86.3867, "matched_fragments": 955, "total_fragments": 1240, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aestuariibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014596935.1", "gtdb_species": "s__Aestuariibaculum suncheonense", "ani": 85.0003, "matched_fragments": 891, "total_fragments": 1240, "gtdb_taxonomy": 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