{ "type": "genome", "identifier": "GCF_022489035.1", "organism": "Christiangramia lutea", "title": "Christiangramia lutea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhejiang University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022489035.1", "bioproject": "PRJNA224116", "biosample": "SAMN26288003", "wgs_master": "JAKVTV000000000.1", "refseq_category": "reference genome", "taxid": "1607951", "species_taxid": "1607951", "organism_name": "Christiangramia lutea", "infraspecific_name": "strain=YJ019", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/06", "asm_name": "ASM2248903v1", "asm_submitter": "Zhejiang University", "gbrs_paired_asm": "GCA_022489035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/489/035/GCF_022489035.1_ASM2248903v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3466166", "genome_size_ungapped": "3466068", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022489035.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "3214", "protein_coding_gene_count": "3147", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-06", "dateModified": "2022-03-06", "datePublished": "2022-03-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Christiangramia lutea" ], "sample_taxid": [ "1607951" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "0.975 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3466166", "Number of Sequences": "31", "Longest Sequences (bp)": "1396025", "N50 (bp)": "639985", "Gap Ratio (%)": "0.002827", "GCcontent (%)": "38.3", "Number of CDSs": "3118", "Average Protein Length": "331.5", "Coding Ratio (%)": "89.5", "Number of rRNAs": "5", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gramella lutea", "strain": "strain=YJ019", "accession": "GCA_022489035.1", "taxid": 1607951, "species_taxid": 1607951, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1139, "total_fragments": 1141, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gramella gaetbulicola", "strain": "strain=DSM 23082", "accession": "GCA_003054225.1", "taxid": 703340, "species_taxid": 703340, "relation_to_type": "type", "validated": true, "ani": 80.8255, "matched_fragments": 652, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella aestuarii", "strain": "strain=BS12", "accession": "GCA_009735585.1", "taxid": 1028746, "species_taxid": 1028746, "relation_to_type": "type", "validated": true, "ani": 80.7512, "matched_fragments": 600, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella echinicola", "strain": "strain=DSM 19838", "accession": "GCA_000423065.1", "taxid": 279359, "species_taxid": 279359, "relation_to_type": "type", "validated": true, "ani": 80.4481, "matched_fragments": 631, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella sabulilitoris", "strain": "strain=HSMS-1", "accession": "GCA_007050985.1", "taxid": 2583991, "species_taxid": 2583991, "relation_to_type": "type", "validated": true, "ani": 80.1344, "matched_fragments": 534, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=KT0803", "accession": "GCA_000060345.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.8308, "matched_fragments": 540, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=CGMCC 1.15422", "accession": "GCA_014642775.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.7611, "matched_fragments": 558, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella crocea", "strain": "strain=YB25", "accession": "GCA_022410465.1", "taxid": 2904124, "species_taxid": 2904124, "relation_to_type": "type", "validated": true, "ani": 79.2882, "matched_fragments": 446, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salegentibacter lacus", "strain": "strain=LM13S", "accession": "GCA_020164555.1", "taxid": 2873599, "species_taxid": 2873599, "relation_to_type": "type", "validated": true, "ani": 77.3162, "matched_fragments": 207, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertkochia sediminum", "strain": "strain=1368", "accession": "GCA_016786255.1", "taxid": 2785326, "species_taxid": 2785326, "relation_to_type": "type", "validated": true, "ani": 76.915, "matched_fragments": 52, "total_fragments": 1141, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003054225.1", "gtdb_species": "s__Gramella gaetbulicola", "ani": 80.8044, "matched_fragments": 655, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009735585.1", "gtdb_species": "s__Gramella aestuarii", "ani": 80.76, "matched_fragments": 600, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423065.1", "gtdb_species": "s__Gramella echinicola", "ani": 80.4404, "matched_fragments": 630, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007050985.1", "gtdb_species": "s__Gramella sabulilitoris", "ani": 80.1357, "matched_fragments": 532, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105135.1", "gtdb_species": "s__Gramella sp900105135", "ani": 79.912, "matched_fragments": 517, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000060345.1", "gtdb_species": "s__Gramella forsetii", "ani": 79.831, "matched_fragments": 540, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004332155.1", "gtdb_species": "s__Gramella sp004332155", "ani": 79.3483, "matched_fragments": 409, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006714895.1", "gtdb_species": "s__Gramella sp006714895", "ani": 79.0719, "matched_fragments": 389, "total_fragments": 1141, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Christiangramia", "lutea" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }