{ "type": "genome", "identifier": "GCF_022549695.1", "organism": "Belliella calami", "title": "Belliella calami", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centre for Ecological Research, Institute of Aquatic Ecology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022549695.1", "bioproject": "PRJNA224116", "biosample": "SAMN26418662", "wgs_master": "JAKZGS000000000.1", "refseq_category": "reference genome", "taxid": "2923436", "species_taxid": "2923436", "organism_name": "Belliella calami", "infraspecific_name": "strain=DSM 107340", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/12", "asm_name": "ASM2254969v1", "asm_submitter": "Centre for Ecological Research, Institute of Aquatic Ecology", "gbrs_paired_asm": "GCA_022549695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/549/695/GCF_022549695.1_ASM2254969v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4666190", "genome_size_ungapped": "4665409", "gc_percent": "37.000000", "replicon_count": "0", "scaffold_count": "49", "contig_count": "49", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022549695.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3950", "protein_coding_gene_count": "3880", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-12", "dateModified": "2022-03-12", "datePublished": "2022-03-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Belliella calami" ], "sample_taxid": [ "2923436" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Hungary:Lake Neusiedl/Ferto" ], "sample_host_location_id": [], "data_size": "1.307 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4666190", "Number of Sequences": "49", "Longest Sequences (bp)": "581926", "N50 (bp)": "206217", "Gap Ratio (%)": "0.016737", "GCcontent (%)": "37.1", "Number of CDSs": "3826", "Average Protein Length": "343.9", "Coding Ratio (%)": "84.6", "Number of rRNAs": "2", "Number of tRNAs": "35", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Belliella baltica", "strain": "strain=DSM 15883", "accession": "GCA_000265405.1", "taxid": 232259, "species_taxid": 232259, "relation_to_type": "type", "validated": true, "ani": 80.0965, "matched_fragments": 590, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=JCM 19468", "accession": "GCA_022549755.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 79.9982, "matched_fragments": 606, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella aquatica", "strain": "strain=CGMCC 1.12479", "accession": "GCA_014637795.1", "taxid": 1323734, "species_taxid": 1323734, "relation_to_type": "type", "validated": true, "ani": 79.9574, "matched_fragments": 620, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella buryatensis", "strain": "strain=5C", "accession": "GCA_900188245.1", "taxid": 1500549, "species_taxid": 1500549, "relation_to_type": "type", "validated": true, "ani": 78.8946, "matched_fragments": 398, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella pelovolcani", "strain": "strain=DSM 46698", "accession": "GCA_900156785.1", "taxid": 529505, "species_taxid": 529505, "relation_to_type": "type", "validated": true, "ani": 78.4508, "matched_fragments": 420, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Belliella kenyensis", "strain": "strain=DSM 46651", "accession": "GCA_022549675.1", "taxid": 1472724, "species_taxid": 1472724, "relation_to_type": "type", "validated": true, "ani": 78.3347, "matched_fragments": 377, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Echinicola salinicaeni", "strain": "strain=P51", "accession": "GCA_014280965.1", "taxid": 2762757, "species_taxid": 2762757, "relation_to_type": "type", "validated": true, "ani": 77.0429, "matched_fragments": 123, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodonellum psychrophilum", "strain": "strain=DSM 17998", "accession": "GCA_000381545.1", "taxid": 336828, "species_taxid": 336828, "relation_to_type": "type", "validated": true, "ani": 77.0366, "matched_fragments": 206, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus iocasae", "strain": "strain=DSM 102044", "accession": "GCA_014206875.1", "taxid": 1836499, "species_taxid": 1836499, "relation_to_type": "type", "validated": true, "ani": 76.722, "matched_fragments": 141, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 76.4618, "matched_fragments": 133, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=CGMCC 1.11027", "accession": "GCA_004366575.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 76.4033, "matched_fragments": 132, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000265405.1", "gtdb_species": "s__Belliella baltica", "ani": 80.087, "matched_fragments": 591, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014637795.1", "gtdb_species": "s__Belliella aquatica", "ani": 79.9592, "matched_fragments": 620, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900188245.1", "gtdb_species": "s__Belliella buryatensis", "ani": 78.9055, "matched_fragments": 397, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900156785.1", "gtdb_species": "s__Belliella pelovolcani", "ani": 78.4673, "matched_fragments": 418, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Belliella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007692705.1", "gtdb_species": "s__Mongoliibacter sp007692705", "ani": 77.3209, "matched_fragments": 195, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Mongoliibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004216715.1", "gtdb_species": "s__Cecembia calidifontis", "ani": 77.0388, "matched_fragments": 196, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Cecembia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000381545.1", "gtdb_species": "s__Rhodonellum psychrophilum", "ani": 77.0366, "matched_fragments": 206, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Rhodonellum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018642165.1", "gtdb_species": "s__Echinicola shivajiensis", "ani": 77.036, "matched_fragments": 134, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Echinicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003316845.1", "gtdb_species": "s__Aquiflexum_A aquatile", "ani": 76.7545, "matched_fragments": 179, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Aquiflexum_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014206875.1", "gtdb_species": "s__Algoriphagus iocasae", "ani": 76.722, "matched_fragments": 141, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003259505.1", "gtdb_species": "s__Algoriphagus yeomjeoni", "ani": 76.6205, "matched_fragments": 117, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900148515.1", "gtdb_species": "s__Algoriphagus zhangzhouensis", "ani": 76.4618, "matched_fragments": 133, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002150505.1", "gtdb_species": "s__Algoriphagus ratkowskyi", "ani": 76.3003, "matched_fragments": 112, "total_fragments": 1535, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Cyclobacteriaceae;g__Algoriphagus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.523, "cell_length": 0.249, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 31.0, "optimum_ph": 7.5, "genome_size": 4061500.0, "gc_content": 36.8, "coding_genes": 3666.0, "rRNA16S_genes": 4.0, "tRNA_genes": 39.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Belliella", "calami" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }