{ "type": "genome", "identifier": "GCF_022558505.1", "organism": "Mycobacterium malmoense", "title": "Mycobacterium malmoense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Uppsala University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022558505.1", "bioproject": "PRJNA224116", "biosample": "SAMN15569027", "wgs_master": "na", "refseq_category": "na", "taxid": "1780", "species_taxid": "1780", "organism_name": "Mycobacterium malmoense", "infraspecific_name": "strain=DSM 44163", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/14", "asm_name": "ASM2255850v1", "asm_submitter": "Uppsala University", "gbrs_paired_asm": "GCA_022558505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/558/505/GCF_022558505.1_ASM2255850v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5319698", "genome_size_ungapped": "5319698", "gc_percent": "67.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022558505.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "4968", "protein_coding_gene_count": "4726", "non_coding_gene_count": "52", "pubmed_id": "36243697" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-14", "dateModified": "2022-03-14", "datePublished": "2022-03-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium malmoense" ], "sample_taxid": [ "1780" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], 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95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 89.4287, "matched_fragments": 1417, "total_fragments": 1773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 85.6511, "matched_fragments": 1275, "total_fragments": 1773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 85.147, "matched_fragments": 1192, "total_fragments": 1773, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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