{ "type": "genome", "identifier": "GCF_022570735.2", "organism": "Christiangramia oceanisediminis", "title": "Christiangramia oceanisediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "First Institute of Oceanography, Ministry of Natural Resources", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022570735.2", "bioproject": "PRJNA224116", "biosample": "SAMN26202043", "wgs_master": "JANCNS000000000.1", "refseq_category": "reference genome", "taxid": "2920386", "species_taxid": "2920386", "organism_name": "Christiangramia oceanisediminis", "infraspecific_name": "strain=GC03-9", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/07/16", "asm_name": "ASM2257073v2", "asm_submitter": "First Institute of Oceanography, Ministry of Natural Resources", "gbrs_paired_asm": "GCA_022570735.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/570/735/GCF_022570735.2_ASM2257073v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3752850", "genome_size_ungapped": "3752850", "gc_percent": "41.000000", "replicon_count": "0", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022570735.2-RS_2024_04_21", "annotation_date": "2024-04-21", "total_gene_count": "3421", "protein_coding_gene_count": "3362", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-07-16", "dateModified": "2022-07-16", "datePublished": "2022-07-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Christiangramia oceanisediminis" ], "sample_taxid": [ "2920386" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.061 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3752850", "Number of Sequences": "5", "Longest Sequences (bp)": "1657971", "N50 (bp)": "1160404", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.2", "Number of CDSs": "3327", "Average Protein Length": "340.3", "Coding Ratio (%)": "90.5", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gramella flava", "strain": "strain=JLT2011", "accession": "GCA_001951155.1", "taxid": 1486245, "species_taxid": 1486245, "relation_to_type": "type", "validated": true, "ani": 79.6643, "matched_fragments": 370, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella flava", "strain": "strain=JLT2011", "accession": "GCA_002120265.1", "taxid": 1486245, "species_taxid": 1486245, "relation_to_type": "type", "validated": true, "ani": 79.4994, "matched_fragments": 367, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=CGMCC 1.15422", "accession": "GCA_014642775.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.4606, "matched_fragments": 440, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella forsetii", "strain": "strain=KT0803", "accession": "GCA_000060345.1", "taxid": 411153, "species_taxid": 411153, "relation_to_type": "type", "validated": true, "ani": 79.4317, "matched_fragments": 438, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella lutea", "strain": "strain=YJ019", "accession": "GCA_022489035.1", "taxid": 1607951, "species_taxid": 1607951, "relation_to_type": "type", "validated": true, "ani": 79.4091, "matched_fragments": 454, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella gaetbulicola", "strain": "strain=DSM 23082", "accession": "GCA_003054225.1", "taxid": 703340, "species_taxid": 703340, "relation_to_type": "type", "validated": true, "ani": 79.2296, "matched_fragments": 508, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella aestuarii", "strain": "strain=BS12", "accession": "GCA_009735585.1", "taxid": 1028746, "species_taxid": 1028746, "relation_to_type": "type", "validated": true, "ani": 79.209, "matched_fragments": 508, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella echinicola", "strain": "strain=DSM 19838", "accession": "GCA_000423065.1", "taxid": 279359, "species_taxid": 279359, "relation_to_type": "type", "validated": true, "ani": 79.1909, "matched_fragments": 442, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella sabulilitoris", "strain": "strain=HSMS-1", "accession": "GCA_007050985.1", "taxid": 2583991, "species_taxid": 2583991, "relation_to_type": "type", "validated": true, "ani": 79.1515, "matched_fragments": 395, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella crocea", "strain": "strain=YB25", "accession": "GCA_022410465.1", "taxid": 2904124, "species_taxid": 2904124, "relation_to_type": "type", "validated": true, "ani": 79.015, "matched_fragments": 463, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gramella salexigens", "strain": "strain=LPB0144", "accession": "GCA_001889005.1", "taxid": 1913577, "species_taxid": 1913577, "relation_to_type": "type", "validated": true, "ani": 78.7198, "matched_fragments": 334, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertkochia sediminum", "strain": "strain=1368", "accession": "GCA_016786255.1", "taxid": 2785326, "species_taxid": 2785326, "relation_to_type": "type", "validated": true, "ani": 76.7174, "matched_fragments": 73, "total_fragments": 1248, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_009735695.1", "gtdb_species": "s__Gramella sp009735695", "ani": 84.1534, "matched_fragments": 931, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001951155.1", "gtdb_species": "s__Gramella flava", "ani": 79.6618, "matched_fragments": 371, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.04", "min_intra_species_ani": "98.07", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000060345.1", "gtdb_species": "s__Gramella forsetii", "ani": 79.4362, "matched_fragments": 438, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003054225.1", "gtdb_species": "s__Gramella gaetbulicola", "ani": 79.2296, "matched_fragments": 508, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009735585.1", "gtdb_species": "s__Gramella aestuarii", "ani": 79.2184, "matched_fragments": 507, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000423065.1", "gtdb_species": "s__Gramella echinicola", "ani": 79.1904, "matched_fragments": 442, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007050985.1", "gtdb_species": "s__Gramella sabulilitoris", "ani": 79.1401, "matched_fragments": 396, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004332155.1", "gtdb_species": "s__Gramella sp004332155", "ani": 79.028, "matched_fragments": 448, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001889005.1", "gtdb_species": "s__Gramella salexigens", "ani": 78.7198, "matched_fragments": 334, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006714895.1", "gtdb_species": "s__Gramella sp006714895", "ani": 78.4991, "matched_fragments": 331, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Gramella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168265.1", "gtdb_species": "s__Salegentibacter salarius", "ani": 77.3414, "matched_fragments": 204, "total_fragments": 1248, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Salegentibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Christiangramia", "oceanisediminis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }