{
    "type": "genome",
    "identifier": "GCF_022602435.1",
    "organism": "Rosenbergiella epipactidis subsp. japonicus",
    "title": "Rosenbergiella epipactidis subsp. japonicus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Complutense University of Madrid",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022602435.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN26199805",
        "wgs_master": "JAKZKK000000000.1",
        "refseq_category": "na",
        "taxid": "3034750",
        "species_taxid": "1544694",
        "organism_name": "Rosenbergiella epipactidis subsp. japonicus",
        "infraspecific_name": "strain=K24",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/16",
        "asm_name": "ASM2260243v1",
        "asm_submitter": "Complutense University of Madrid",
        "gbrs_paired_asm": "GCA_022602435.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/602/435/GCF_022602435.1_ASM2260243v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3366364",
        "genome_size_ungapped": "3365020",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "78",
        "contig_count": "78",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022602435.1-RS_2024_03_30",
        "annotation_date": "2024-03-30",
        "total_gene_count": "3358",
        "protein_coding_gene_count": "3206",
        "non_coding_gene_count": "76",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-16",
    "dateModified": "2022-03-16",
    "datePublished": "2022-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rosenbergiella epipactidis subsp. japonicus"
        ],
        "sample_taxid": [
            "3034750"
        ],
        "sample_host_organism": [
            "Eurya japonica"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan: Takaike Kozagawacho Higashimurogun, Wakayama prefecture"
        ],
        "sample_host_location_id": [],
        "data_size": "0.971 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3366364",
        "Number of Sequences": "78",
        "Longest Sequences (bp)": "558292",
        "N50 (bp)": "176646",
        "Gap Ratio (%)": "0.039924",
        "GCcontent (%)": "47.3",
        "Number of CDSs": "3254",
        "Average Protein Length": "301.9",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
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                "accession": "GCA_018494055.1",
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            {
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                "accession": "GCA_900111105.1",
                "taxid": 988801,
                "species_taxid": 988801,
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                "status": "below_threshold"
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            {
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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                "species_taxid": 158823,
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                "matched_fragments": 96,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea stewartii subsp. indologenes",
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                "accession": "GCA_000757405.2",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia coli",
                "strain": "strain=DSM 30083",
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                "species_taxid": 562,
                "relation_to_type": "neotype",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea dispersa",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea rodasii",
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                "accession": "GCA_002095465.1",
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                "species_taxid": 1076549,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=DSM 17582",
                "accession": "GCA_022833075.1",
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                "species_taxid": 208962,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Escherichia albertii",
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                "accession": "GCA_000759775.1",
                "taxid": 208962,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0669,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia iniecta",
                "strain": "strain=B120",
                "accession": "GCA_001267535.1",
                "taxid": 1560201,
                "species_taxid": 1560201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0584,
                "matched_fragments": 149,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shigella sonnei",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shimwellia pseudoproteus",
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                "accession": "GCA_016415625.1",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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                "accession": "GCF_018494055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Rosenbergiella",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
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        "cell_diameter": -0.071,
        "cell_length": 0.322,
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        "genome_size": 3294717.0,
        "gc_content": null,
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        "motility": 1.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Rosenbergiella",
        "epipactidis",
        "subsp.",
        "japonicus"
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}