{
    "type": "genome",
    "identifier": "GCF_022602615.1",
    "organism": "Rosenbergiella epipactidis subsp. californiensis",
    "title": "Rosenbergiella epipactidis subsp. californiensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Complutense University of Madrid",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022602615.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN26199800",
        "wgs_master": "JAKVDE000000000.1",
        "refseq_category": "na",
        "taxid": "3034749",
        "species_taxid": "1544694",
        "organism_name": "Rosenbergiella epipactidis subsp. californiensis",
        "infraspecific_name": "strain=FR72",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/16",
        "asm_name": "ASM2260261v1",
        "asm_submitter": "Complutense University of Madrid",
        "gbrs_paired_asm": "GCA_022602615.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/602/615/GCF_022602615.1_ASM2260261v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3171939",
        "genome_size_ungapped": "3171939",
        "gc_percent": "47.500000",
        "replicon_count": "0",
        "scaffold_count": "126",
        "contig_count": "126",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022602615.1-RS_2024_08_06",
        "annotation_date": "2024-08-06",
        "total_gene_count": "3126",
        "protein_coding_gene_count": "2949",
        "non_coding_gene_count": "82",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-16",
    "dateModified": "2022-03-16",
    "datePublished": "2022-03-16",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rosenbergiella epipactidis subsp. californiensis"
        ],
        "sample_taxid": [
            "3034749"
        ],
        "sample_host_organism": [
            "Diplacus (Mimulus) aurantiacus"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Jasper Ridge Biological Preserve, Stanford, California"
        ],
        "sample_host_location_id": [],
        "data_size": "0.915 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3171939",
        "Number of Sequences": "126",
        "Longest Sequences (bp)": "552807",
        "N50 (bp)": "126189",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.6",
        "Number of CDSs": "2994",
        "Average Protein Length": "305.8",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "66",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
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                "accession": "GCA_900111105.1",
                "taxid": 988801,
                "species_taxid": 988801,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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                "status": "below_threshold"
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                "species_taxid": 1544696,
                "relation_to_type": "type",
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                "ani": 81.3747,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Klebsiella aerogenes",
                "strain": "strain=KCTC 2190",
                "accession": "GCA_000215745.1",
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                "species_taxid": 548,
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                "ani": 78.4823,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Buttiauxella noackiae",
                "strain": "strain=ATCC 51607",
                "accession": "GCA_001654865.1",
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                "ani": 78.4641,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea stewartii subsp. indologenes",
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                "ani_threshold": 95,
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            },
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                "organism_name": "Pantoea rodasii",
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                "ani_threshold": 95,
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            {
                "organism_name": "Escherichia coli",
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                "accession": "GCA_024519395.1",
                "taxid": 562,
                "species_taxid": 562,
                "relation_to_type": "neotype",
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            {
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                "ani_threshold": 95,
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                "ani": 78.1918,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Shigella sonnei",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Lelliottia nimipressuralis",
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                "accession": "GCA_004115925.1",
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                "species_taxid": 69220,
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                "status": "below_threshold"
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            {
                "organism_name": "Escherichia albertii",
                "strain": "strain=DSM 17582",
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            {
                "organism_name": "Escherichia albertii",
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        "gtdb_result": [
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                "accession": "GCF_018494055.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            {
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        ]
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    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.071,
        "cell_length": 0.322,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "epipactidis",
        "subsp.",
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    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}