{ "type": "genome", "identifier": "GCF_022631375.1", "organism": "Hymenobacter cyanobacteriorum", "title": "Hymenobacter cyanobacteriorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022631375.1", "bioproject": "PRJNA224116", "biosample": "SAMN26652225", "wgs_master": "JALBGC000000000.1", "refseq_category": "reference genome", "taxid": "2926463", "species_taxid": "2926463", "organism_name": "Hymenobacter cyanobacteriorum", "infraspecific_name": "strain=DH14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/20", "asm_name": "ASM2263137v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology (KRIBB)", "gbrs_paired_asm": "GCA_022631375.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/631/375/GCF_022631375.1_ASM2263137v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5353395", "genome_size_ungapped": "5353395", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022631375.1-RS_2024_04_05", "annotation_date": "2024-04-05", "total_gene_count": "4522", "protein_coding_gene_count": "4458", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-20", "dateModified": "2022-03-20", "datePublished": "2022-03-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter cyanobacteriorum" ], "sample_taxid": [ "2926463" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Hoenam site" ], "sample_host_location_id": [], "data_size": "1.483 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5353395", "Number of Sequences": "15", "Longest Sequences (bp)": "1248444", "N50 (bp)": "1081706", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "4461", "Average Protein Length": "351.1", "Coding Ratio (%)": "87.8", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter artigasi", "strain": "strain=1B", "accession": "GCA_012275535.1", "taxid": 2719616, "species_taxid": 2719616, "relation_to_type": "type", "validated": true, "ani": 85.6715, "matched_fragments": 1271, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 84.9458, "matched_fragments": 1236, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter ruricola", "strain": "strain=BT662", "accession": "GCA_015694525.1", "taxid": 2791023, "species_taxid": 2791023, "relation_to_type": "type", "validated": true, "ani": 84.747, "matched_fragments": 1249, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter rubidus", "strain": "strain=DG7B", "accession": "GCA_016734815.1", "taxid": 1441626, "species_taxid": 1441626, "relation_to_type": "type", "validated": true, "ani": 84.5354, "matched_fragments": 1204, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 2819236, "species_taxid": 2819236, "relation_to_type": "type", "validated": true, "ani": 84.5103, "matched_fragments": 1243, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter properus", "strain": "strain=BT439", "accession": "GCA_015694735.1", "taxid": 2791026, "species_taxid": 2791026, "relation_to_type": "type", "validated": true, "ani": 84.5027, "matched_fragments": 1249, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter frigidus", "strain": "strain=CGMCC 1.14966", "accession": "GCA_014640435.1", "taxid": 1524095, "species_taxid": 1524095, "relation_to_type": "type", "validated": true, "ani": 83.2987, "matched_fragments": 1095, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter sedentarius", "strain": "strain=DG5B", "accession": "GCA_001507645.1", "taxid": 1411621, "species_taxid": 1411621, "relation_to_type": "type", "validated": true, "ani": 83.0099, "matched_fragments": 1086, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidarius", "strain": "strain=CCM 8643", "accession": "GCA_001816145.1", "taxid": 1908237, "species_taxid": 1908237, "relation_to_type": "type", "validated": true, "ani": 82.9208, "matched_fragments": 1012, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter glacialis", "strain": "strain=CCM 8648", "accession": "GCA_001816165.1", "taxid": 1908236, "species_taxid": 1908236, "relation_to_type": "type", "validated": true, "ani": 82.7488, "matched_fragments": 1008, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter jeongseonensis", "strain": "strain=BT683", "accession": "GCA_015694725.1", "taxid": 2791027, "species_taxid": 2791027, "relation_to_type": "type", "validated": true, "ani": 82.4156, "matched_fragments": 1051, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter montanus", "strain": "strain=BT664", "accession": "GCA_014699115.1", "taxid": 2771359, "species_taxid": 2771359, "relation_to_type": "type", "validated": true, "ani": 81.0129, "matched_fragments": 944, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 79.2984, "matched_fragments": 753, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 79.0304, "matched_fragments": 708, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora cianjurensis", "strain": "strain=DSM 45657", "accession": "GCA_003663795.1", "taxid": 585224, "species_taxid": 585224, "relation_to_type": "type", "validated": true, "ani": 74.8565, "matched_fragments": 67, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinokineospora inagensis", "strain": "strain=DSM 44258", "accession": "GCA_000482865.1", "taxid": 103730, "species_taxid": 103730, "relation_to_type": "type", "validated": true, "ani": 74.634, "matched_fragments": 62, "total_fragments": 1777, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016056375.1", "gtdb_species": "s__Hymenobacter negativus_A", "ani": 85.8317, "matched_fragments": 1267, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "97.78", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_012275535.1", "gtdb_species": "s__Hymenobacter artigasi", "ani": 85.6747, "matched_fragments": 1271, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018967845.1", "gtdb_species": "s__Hymenobacter sp018967845", "ani": 85.2187, "matched_fragments": 1208, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "98.98", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_016427455.1", "gtdb_species": "s__Hymenobacter sp016427455", "ani": 85.0772, "matched_fragments": 1231, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.46", "min_intra_species_ani": "95.46", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_015694525.1", "gtdb_species": "s__Hymenobacter ruricola", "ani": 84.7369, "matched_fragments": 1251, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016734815.1", "gtdb_species": "s__Hymenobacter rubidus", "ani": 84.5609, "matched_fragments": 1201, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015694735.1", "gtdb_species": "s__Hymenobacter properus", "ani": 84.5186, "matched_fragments": 1247, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014640435.1", "gtdb_species": "s__Hymenobacter frigidus", "ani": 83.3007, "matched_fragments": 1094, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001507645.1", "gtdb_species": "s__Hymenobacter sedentarius", "ani": 83.0117, "matched_fragments": 1085, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017571495.1", "gtdb_species": "s__Hymenobacter negativus", "ani": 82.9516, "matched_fragments": 1231, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000715495.1", "gtdb_species": "s__Hymenobacter sp000715495", "ani": 82.9348, "matched_fragments": 1076, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001816145.1", "gtdb_species": "s__Hymenobacter lapidarius", "ani": 82.9021, "matched_fragments": 1015, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001816165.1", "gtdb_species": "s__Hymenobacter glacialis", "ani": 82.7515, "matched_fragments": 1008, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015694725.1", "gtdb_species": "s__Hymenobacter jeongseonensis", "ani": 82.4187, "matched_fragments": 1051, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013294115.1", "gtdb_species": "s__Hymenobacter caeli", "ani": 81.7838, "matched_fragments": 1026, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014699115.1", "gtdb_species": "s__Hymenobacter sp014699115", "ani": 81.032, "matched_fragments": 942, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014333525.1", "gtdb_species": "s__Hymenobacter sp014333525", "ani": 79.3065, "matched_fragments": 734, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004745955.1", "gtdb_species": "s__Hymenobacter elongatus", "ani": 78.9399, "matched_fragments": 608, "total_fragments": 1777, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Hymenobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.338, "doubling_h": null, "growth_tmp": 25.583, "optimum_tmp": 23.888, "optimum_ph": 7.3, "genome_size": 5095981.0, "gc_content": 60.5, "coding_genes": 4057.5, "rRNA16S_genes": 3.0, "tRNA_genes": 43.5, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Hymenobacter", "cyanobacteriorum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }