{
    "type": "genome",
    "identifier": "GCF_022647325.1",
    "organism": "Pantoea deleyi",
    "title": "Pantoea deleyi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Beijing Academy of Agriculture and Forestry Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022647325.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18103995",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "470932",
        "species_taxid": "470932",
        "organism_name": "Pantoea deleyi",
        "infraspecific_name": "strain=LMG24200",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2264732v1",
        "asm_submitter": "Beijing Academy of Agriculture and Forestry Sciences",
        "gbrs_paired_asm": "GCA_022647325.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/647/325/GCF_022647325.1_ASM2264732v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4682225",
        "genome_size_ungapped": "4682225",
        "gc_percent": "57.500000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022647325.1-RS_2024_04_06",
        "annotation_date": "2024-04-06",
        "total_gene_count": "4365",
        "protein_coding_gene_count": "4203",
        "non_coding_gene_count": "110",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Pantoea deleyi"
        ],
        "sample_taxid": [
            "470932"
        ],
        "sample_host_organism": [
            "mushroom"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.313 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4682225",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "3986422",
        "N50 (bp)": "3986422",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "57.7",
        "Number of CDSs": "4310",
        "Average Protein Length": "312.3",
        "Coding Ratio (%)": "86.2",
        "Number of rRNAs": "22",
        "Number of tRNAs": "81",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Pantoea deleyi",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "accession": "GCA_006494415.1",
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                "status": "conclusive"
            },
            {
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                "status": "conclusive"
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            {
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                "species_taxid": 549,
                "relation_to_type": "suspected-type",
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                "ani": 88.5104,
                "matched_fragments": 1285,
                "total_fragments": 1558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea agglomerans",
                "strain": "strain=NBRC 102470",
                "accession": "GCA_001598475.1",
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                "species_taxid": 549,
                "relation_to_type": "suspected-type",
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                "ani": 88.4599,
                "matched_fragments": 1256,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea eucalypti",
                "strain": "strain=LMG 24197",
                "accession": "GCA_009646115.1",
                "taxid": 470933,
                "species_taxid": 470933,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.481,
                "matched_fragments": 1281,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea conspicua",
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                "accession": "GCA_002095315.1",
                "taxid": 472705,
                "species_taxid": 472705,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.401,
                "matched_fragments": 1088,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea stewartii subsp. indologenes",
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                "accession": "GCA_000757405.2",
                "taxid": 66270,
                "species_taxid": 66269,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0354,
                "matched_fragments": 862,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=X001",
                "accession": "GCA_024169515.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.9956,
                "matched_fragments": 786,
                "total_fragments": 1558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia phyllosphaerae",
                "strain": "strain=CMYE1",
                "accession": "GCA_019132875.1",
                "taxid": 2853256,
                "species_taxid": 2853256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2069,
                "matched_fragments": 648,
                "total_fragments": 1558,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Serratia nevei",
                "strain": "strain=S15",
                "accession": "GCA_008364245.1",
                "taxid": 2703794,
                "species_taxid": 2703794,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9077,
                "matched_fragments": 597,
                "total_fragments": 1558,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 98.96,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006494415.1",
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                "ani": 99.9695,
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                "total_fragments": 1558,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.95",
                "min_intra_species_ani": "99.95",
                "mean_intra_species_af": "0.98",
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            },
            {
                "accession": "GCF_003236715.1",
                "gtdb_species": "s__Pantoea sp003236715",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
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                "mean_intra_species_ani": "98.21",
                "min_intra_species_ani": "96.93",
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            },
            {
                "accession": "GCF_004792415.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.00",
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            {
                "accession": "GCF_900115075.1",
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}