{ "type": "genome", "identifier": "GCF_022655595.1", "organism": "Ignatzschineria rhizosphaerae", "title": "Ignatzschineria rhizosphaerae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Inner Mongolia University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022655595.1", "bioproject": "PRJNA224116", "biosample": "SAMN26377311", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2923279", "species_taxid": "2923279", "organism_name": "Ignatzschineria rhizosphaerae", "infraspecific_name": "strain=HR5S32", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2265559v1", "asm_submitter": "Inner Mongolia University", "gbrs_paired_asm": "GCA_022655595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/655/595/GCF_022655595.1_ASM2265559v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3074733", "genome_size_ungapped": "3074733", "gc_percent": "39.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022655595.1-RS_2024_06_17", "annotation_date": "2024-06-17", "total_gene_count": "2836", "protein_coding_gene_count": "2714", "non_coding_gene_count": "91", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Ignatzschineria rhizosphaerae" ], "sample_taxid": [ "2923279" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Inner Mongolia" ], "sample_host_location_id": [], "data_size": "0.863 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3074733", "Number of Sequences": "1", "Longest Sequences (bp)": "3074733", "N50 (bp)": "3074733", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.8", "Number of CDSs": "2795", "Average Protein Length": "305.6", "Coding Ratio (%)": "83.3", "Number of rRNAs": "18", "Number of tRNAs": "68", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ignatzschineria indica", "strain": "strain=KCTC 22643", "accession": "GCA_003121925.1", "taxid": 472583, "species_taxid": 472583, "relation_to_type": "type", "validated": true, "ani": 78.9128, "matched_fragments": 267, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ignatzschineria cameli", "strain": "strain=UAE-HKU57", "accession": "GCA_003121895.1", "taxid": 2182793, "species_taxid": 2182793, "relation_to_type": "type", "validated": true, "ani": 78.7083, "matched_fragments": 276, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ignatzschineria indica", "strain": "strain=KCTC 22643", "accession": "GCA_014652015.1", "taxid": 472583, "species_taxid": 472583, "relation_to_type": "type", "validated": true, "ani": 78.708, "matched_fragments": 258, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ignatzschineria larvae", "strain": "strain=DSM 13226", "accession": "GCA_000510805.1", "taxid": 112009, "species_taxid": 112009, "relation_to_type": "type", "validated": true, "ani": 78.6411, "matched_fragments": 233, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ignatzschineria ureiclastica", "strain": "strain=KCTC 22644", "accession": "GCA_003121845.1", "taxid": 472582, "species_taxid": 472582, "relation_to_type": "type", "validated": true, "ani": 78.4169, "matched_fragments": 259, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ignatzschineria ureiclastica", "strain": "strain=KCTC 22644", "accession": "GCA_014652035.1", "taxid": 472582, "species_taxid": 472582, "relation_to_type": "type", "validated": true, "ani": 78.3422, "matched_fragments": 255, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Wohlfahrtiimonas populi", "strain": "strain=34C10-3-10", "accession": "GCA_002006795.1", "taxid": 1940240, "species_taxid": 1940240, "relation_to_type": "type", "validated": true, "ani": 76.3313, "matched_fragments": 58, "total_fragments": 1024, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_019113305.1", "gtdb_species": "s__Ignatzschineria merdigallinarum", "ani": 81.4318, "matched_fragments": 450, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Ignatzschineria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003121925.1", "gtdb_species": "s__Ignatzschineria indica", "ani": 78.8969, "matched_fragments": 268, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Ignatzschineria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002252045.1", "gtdb_species": "s__Ignatzschineria sp002252045", "ani": 78.8547, "matched_fragments": 269, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Ignatzschineria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003121895.1", "gtdb_species": "s__Ignatzschineria cameli", "ani": 78.716, "matched_fragments": 275, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Ignatzschineria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.86", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_000510805.1", "gtdb_species": "s__Ignatzschineria larvae", "ani": 78.648, "matched_fragments": 232, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Ignatzschineria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003121845.1", "gtdb_species": "s__Ignatzschineria ureiclastica", "ani": 78.431, "matched_fragments": 257, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Ignatzschineria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_012513365.1", "gtdb_species": "s__JAAZCI01 sp012513365", "ani": 77.2359, "matched_fragments": 76, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__JAAZCI01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002006795.1", "gtdb_species": "s__Wohlfahrtiimonas populi", "ani": 76.3173, "matched_fragments": 57, "total_fragments": 1024, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Cardiobacteriales;f__Wohlfahrtiimonadaceae;g__Wohlfahrtiimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.097, "cell_length": 0.301, "doubling_h": null, "growth_tmp": 35.166, "optimum_tmp": 32.5, "optimum_ph": null, "genome_size": 2452307.0, "gc_content": 40.4, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Ignatzschineria", "rhizosphaerae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }