{ "type": "genome", "identifier": "GCF_022662015.1", "organism": "Aestuariivivens sediminicola", "title": "Aestuariivivens sediminicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quanzhou Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022662015.1", "bioproject": "PRJNA224116", "biosample": "SAMN25419651", "wgs_master": "JAKMCM000000000.1", "refseq_category": "reference genome", "taxid": "2913560", "species_taxid": "2913560", "organism_name": "Aestuariivivens sediminicola", "infraspecific_name": "strain=MTV5-3", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2266201v1", "asm_submitter": "Quanzhou Normal University", "gbrs_paired_asm": "GCA_022662015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/662/015/GCF_022662015.1_ASM2266201v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3654899", "genome_size_ungapped": "3654899", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022662015.1-RS_2024_04_06", "annotation_date": "2024-04-06", "total_gene_count": "3119", "protein_coding_gene_count": "3068", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariivivens sediminicola" ], "sample_taxid": [ "2913560" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Quanzhou Bay" ], "sample_host_location_id": [], "data_size": "1.038 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3654899", "Number of Sequences": "21", "Longest Sequences (bp)": "1150574", "N50 (bp)": "518407", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.4", "Number of CDSs": "3043", "Average Protein Length": "351.3", "Coding Ratio (%)": "87.7", "Number of rRNAs": "3", "Number of tRNAs": "38", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariivivens sediminicola", "strain": "strain=MTV5-3", "accession": "GCA_022662015.1", "taxid": 2913560, "species_taxid": 2913560, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1205, "total_fragments": 1206, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aestuariivivens sediminis", "strain": "strain=S-DT1-15", "accession": "GCA_022662105.1", "taxid": 2913557, "species_taxid": 2913557, "relation_to_type": "type", "validated": true, "ani": 79.4733, "matched_fragments": 527, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 78.2849, "matched_fragments": 301, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 77.8104, "matched_fragments": 299, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter aestuarii", "strain": "strain=KCTC 23449", "accession": "GCA_006148925.1", "taxid": 912802, "species_taxid": 912802, "relation_to_type": "type", "validated": true, "ani": 77.5363, "matched_fragments": 198, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 77.4946, "matched_fragments": 130, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola algicola", "strain": "strain=Gy8", "accession": "GCA_007997385.1", "taxid": 1719036, "species_taxid": 1719036, "relation_to_type": "type", "validated": true, "ani": 77.4832, "matched_fragments": 125, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": "strain=HU1-3", "accession": "GCA_016827605.1", "taxid": 2799948, "species_taxid": 2799948, "relation_to_type": "type", "validated": true, "ani": 77.4513, "matched_fragments": 123, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera neustonica", "strain": "strain=JCM19743", "accession": "GCA_002895005.1", "taxid": 1445657, "species_taxid": 1445657, "relation_to_type": "type", "validated": true, "ani": 77.3295, "matched_fragments": 101, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 77.1469, "matched_fragments": 115, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella haliclonae", "strain": "strain=CCM 8681", "accession": "GCA_014635865.1", "taxid": 2048558, "species_taxid": 2048558, "relation_to_type": "type", "validated": true, "ani": 76.9369, "matched_fragments": 73, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.8405, "matched_fragments": 149, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=RU-4-M-4", "accession": "GCA_007559325.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 76.829, "matched_fragments": 149, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 76.7298, "matched_fragments": 165, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.7018, "matched_fragments": 100, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter flavum", "strain": "strain=3B", "accession": "GCA_002843175.1", "taxid": 1909700, "species_taxid": 1909700, "relation_to_type": "type", "validated": true, "ani": 76.6842, "matched_fragments": 140, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gelidibacter salicanalis", "strain": "strain=IC162", "accession": "GCA_007997285.1", "taxid": 291193, "species_taxid": 291193, "relation_to_type": "type", "validated": true, "ani": 76.5692, "matched_fragments": 71, "total_fragments": 1206, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900115185.1", "gtdb_species": "s__Algorimicrobium echini", "ani": 77.5598, "matched_fragments": 85, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algorimicrobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "97.77", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_006148925.1", "gtdb_species": "s__Algibacter_D aestuarii", "ani": 77.5363, "matched_fragments": 198, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114265.1", "gtdb_species": "s__Flaviramulus basaltis", "ani": 77.5077, "matched_fragments": 167, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flaviramulus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004358095.2", "gtdb_species": "s__Seonamhaeicola sp004358095", "ani": 77.4975, "matched_fragments": 161, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001310225.1", "gtdb_species": "s__Algibacter_A alginicilyticus", "ani": 77.4946, "matched_fragments": 130, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007997385.1", "gtdb_species": "s__Seonamhaeicola algicola", "ani": 77.4832, "matched_fragments": 125, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000826645.1", "gtdb_species": "s__Psychroserpens mesophilus", "ani": 77.3286, "matched_fragments": 92, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Psychroserpens", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014202195.1", "gtdb_species": "s__Oceanihabitans iliipiscarium", "ani": 77.327, "matched_fragments": 85, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Oceanihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006974145.1", "gtdb_species": "s__Changchengzhania lutea", "ani": 77.2061, "matched_fragments": 144, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Changchengzhania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012910715.1", "gtdb_species": "s__Flavivirga sp012910715", "ani": 77.162, "matched_fragments": 164, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { 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"s__Flavivirga rizhaonensis", "ani": 77.14, "matched_fragments": 140, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002886045.1", "gtdb_species": "s__Flavivirga eckloniae", "ani": 77.1095, "matched_fragments": 141, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112595.1", "gtdb_species": "s__Algibacter_B pectinivorans", "ani": 77.067, 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"gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_014596975.1", "gtdb_species": "s__Aestuariibaculum marinum", "ani": 76.8341, "matched_fragments": 137, "total_fragments": 1206, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aestuariibaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009746565.1", "gtdb_species": "s__Mariniflexile sp002426835", "ani": 76.7974, "matched_fragments": 107, "total_fragments": 1206, "gtdb_taxonomy": 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