{ "type": "genome", "identifier": "GCF_022662105.1", "organism": "Aestuariivivens sediminis", "title": "Aestuariivivens sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quanzhou Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022662105.1", "bioproject": "PRJNA224116", "biosample": "SAMN25419648", "wgs_master": "JAKMCP000000000.1", "refseq_category": "na", "taxid": "2913557", "species_taxid": "2913557", "organism_name": "Aestuariivivens sediminis", "infraspecific_name": "strain=S-DT1-15", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2266210v1", "asm_submitter": "Quanzhou Normal University", "gbrs_paired_asm": "GCA_022662105.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/662/105/GCF_022662105.1_ASM2266210v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3932727", "genome_size_ungapped": "3932727", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022662105.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3338", "protein_coding_gene_count": "3284", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariivivens sediminis" ], "sample_taxid": [ "2913557" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Quanzhou Bay" ], "sample_host_location_id": [], "data_size": "1.112 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3932727", "Number of Sequences": "13", "Longest Sequences (bp)": "1058970", "N50 (bp)": "805210", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.7", "Number of CDSs": "3273", "Average Protein Length": "353.7", "Coding Ratio (%)": "88.3", "Number of rRNAs": "2", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariivivens sediminis", "strain": "strain=S-DT1-15", "accession": "GCA_022662105.1", "taxid": 2913557, "species_taxid": 2913557, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1304, "total_fragments": 1304, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aestuariivivens sediminicola", "strain": "strain=MTV5-3", "accession": "GCA_022662015.1", "taxid": 2913560, "species_taxid": 2913560, "relation_to_type": "type", "validated": true, "ani": 79.3991, "matched_fragments": 526, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 78.3409, "matched_fragments": 458, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 78.3307, "matched_fragments": 403, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Seonamhaeicola maritimus", "strain": "strain=1505", "accession": "GCA_008056315.1", "taxid": 2591822, "species_taxid": 2591822, "relation_to_type": "type", "validated": true, "ani": 77.2969, "matched_fragments": 210, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana crocina", "strain": "strain=HST1-43", "accession": "GCA_012037625.1", "taxid": 393006, "species_taxid": 393006, "relation_to_type": "type", "validated": true, "ani": 77.0646, "matched_fragments": 183, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 76.9607, "matched_fragments": 168, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 76.9576, "matched_fragments": 160, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 76.8908, "matched_fragments": 226, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthomarina gelatinilytica", "strain": "strain=AK20", "accession": "GCA_000348685.1", "taxid": 1137281, "species_taxid": 1137281, "relation_to_type": "type", "validated": true, "ani": 76.8802, "matched_fragments": 125, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella pacifica", "strain": "strain=SW033", "accession": "GCA_004310335.1", "taxid": 1080224, "species_taxid": 1080224, "relation_to_type": "type", "validated": true, "ani": 76.721, "matched_fragments": 158, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 76.7165, "matched_fragments": 153, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter alginicilyticus", "strain": "strain=HZ22", "accession": "GCA_001310225.1", "taxid": 1736674, "species_taxid": 1736674, "relation_to_type": "type", "validated": true, "ani": 76.6664, "matched_fragments": 175, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bizionia echini", "strain": "strain=DSM 23925", "accession": "GCA_900115185.1", "taxid": 649333, "species_taxid": 649333, "relation_to_type": "type", "validated": true, "ani": 76.5578, "matched_fragments": 124, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 76.4065, "matched_fragments": 158, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Psychroserpens mesophilus", "strain": "strain=JCM 13413", "accession": "GCA_000826645.1", "taxid": 325473, "species_taxid": 325473, "relation_to_type": "type", "validated": true, "ani": 76.3166, "matched_fragments": 108, "total_fragments": 1304, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_008056315.1", "gtdb_species": "s__Seonamhaeicola maritimus", "ani": 77.268, "matched_fragments": 210, 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"d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wocania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016428595.1", "gtdb_species": "s__Snuella sp016428595", "ani": 77.1446, "matched_fragments": 190, "total_fragments": 1304, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Snuella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014646655.1", "gtdb_species": "s__Yeosuana aromativorans", "ani": 77.1378, "matched_fragments": 185, "total_fragments": 1304, "gtdb_taxonomy": 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