{ "type": "genome", "identifier": "GCF_022662175.1", "organism": "Aestuariivivens marinum", "title": "Aestuariivivens marinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Quanzhou Normal University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022662175.1", "bioproject": "PRJNA224116", "biosample": "SAMN25419646", "wgs_master": "JAKMCR000000000.1", "refseq_category": "reference genome", "taxid": "2913555", "species_taxid": "2913555", "organism_name": "Aestuariivivens marinum", "infraspecific_name": "strain=MT3-5-12", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2266217v1", "asm_submitter": "Quanzhou Normal University", "gbrs_paired_asm": "GCA_022662175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/662/175/GCF_022662175.1_ASM2266217v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3214764", "genome_size_ungapped": "3214764", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022662175.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "2796", "protein_coding_gene_count": "2744", "non_coding_gene_count": "48", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Aestuariivivens marinum" ], "sample_taxid": [ "2913555" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Quanzhou Bay" ], "sample_host_location_id": [], "data_size": "0.903 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3214764", "Number of Sequences": "13", "Longest Sequences (bp)": "1669144", "N50 (bp)": "1669144", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.8", "Number of CDSs": "2741", "Average Protein Length": "348.9", "Coding Ratio (%)": "89.2", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1065, "total_fragments": 1065, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aestuariivivens insulae", "strain": "strain=AH-MY3", "accession": "GCA_022662195.1", "taxid": 1621988, "species_taxid": 1621988, "relation_to_type": "type", "validated": true, "ani": 79.8061, "matched_fragments": 582, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens sediminis", "strain": "strain=S-DT1-15", "accession": "GCA_022662105.1", "taxid": 2913557, "species_taxid": 2913557, "relation_to_type": "type", "validated": true, "ani": 78.3628, "matched_fragments": 408, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens sediminicola", "strain": "strain=MTV5-3", "accession": "GCA_022662015.1", "taxid": 2913560, "species_taxid": 2913560, "relation_to_type": "type", "validated": true, "ani": 78.2356, "matched_fragments": 297, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter onchidii", "strain": "strain=XY-114", "accession": "GCA_004804355.1", "taxid": 2562860, "species_taxid": 2562860, "relation_to_type": "type", "validated": true, "ani": 77.8263, "matched_fragments": 213, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 2559571, "relation_to_type": "type", "validated": true, "ani": 77.7999, "matched_fragments": 267, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pectinivorans", "strain": "strain=DSM 25730", "accession": "GCA_900112595.1", "taxid": 870482, "species_taxid": 870482, "relation_to_type": "type", "validated": true, "ani": 77.6594, "matched_fragments": 249, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 77.5777, "matched_fragments": 273, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.4779, "matched_fragments": 214, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tamlana nanhaiensis", "strain": "strain=FHC16", "accession": "GCA_000943555.1", "taxid": 1382798, "species_taxid": 1382798, "relation_to_type": "type", "validated": true, "ani": 77.4739, "matched_fragments": 246, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella flava", "strain": "strain=T58", "accession": "GCA_004310325.1", "taxid": 2527939, "species_taxid": 2527939, "relation_to_type": "type", "validated": true, "ani": 77.4545, "matched_fragments": 243, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter amylolyticus", "strain": "strain=DSM 29199", "accession": "GCA_014202225.1", "taxid": 1608400, "species_taxid": 1608400, "relation_to_type": "type", "validated": true, "ani": 77.4355, "matched_fragments": 246, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Confluentibacter citreus", "strain": "strain=XJNY", "accession": "GCA_002807055.1", "taxid": 2007307, "species_taxid": 2007307, "relation_to_type": "type", "validated": true, "ani": 77.4167, "matched_fragments": 229, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Changchengzhania lutea", "strain": "strain=SM1355", "accession": "GCA_006974145.1", "taxid": 2049305, "species_taxid": 2049305, "relation_to_type": "type", "validated": true, "ani": 77.3264, "matched_fragments": 224, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella sediminis", "strain": "strain=DSM 28134", "accession": "GCA_003387355.1", "taxid": 1382466, "species_taxid": 1382466, "relation_to_type": "type", "validated": true, "ani": 77.1567, "matched_fragments": 117, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Olleya aquimaris", "strain": "strain=DSM 24464", "accession": "GCA_003259525.1", "taxid": 639310, "species_taxid": 639310, "relation_to_type": "type", "validated": true, "ani": 77.1105, "matched_fragments": 161, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 76.9699, "matched_fragments": 158, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella eckloniae", "strain": "strain=EC29", "accession": "GCA_013249045.1", "taxid": 1089306, "species_taxid": 1089306, "relation_to_type": "type", "validated": true, "ani": 76.8421, "matched_fragments": 124, "total_fragments": 1065, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000789235.1", "gtdb_species": "s__Wocania ichthyoenteri", "ani": 77.8518, "matched_fragments": 322, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wocania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000941055.1", "gtdb_species": "s__Siansivirga zeaxanthinifaciens", "ani": 77.8379, "matched_fragments": 237, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Siansivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001971785.1", "gtdb_species": "s__Seonamhaeicola sp001971785", "ani": 77.8372, "matched_fragments": 278, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Seonamhaeicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004791695.1", "gtdb_species": "s__Flavivirga rizhaonensis", "ani": 77.8125, "matched_fragments": 266, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavivirga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004804355.1", "gtdb_species": "s__Tamlana_C sp004804355", "ani": 77.8044, "matched_fragments": 212, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Tamlana_C", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008056315.1", "gtdb_species": "s__Seonamhaeicola 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317, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Wocania", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900112595.1", "gtdb_species": "s__Algibacter_B pectinivorans", "ani": 77.6619, "matched_fragments": 248, "total_fragments": 1065, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Algibacter_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900114265.1", "gtdb_species": "s__Flaviramulus basaltis", "ani": 77.6431, "matched_fragments": 324, "total_fragments": 1065, "gtdb_taxonomy": 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