{ "type": "genome", "identifier": "GCF_022662535.1", "organism": "Polaribacter marinus", "title": "Polaribacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022662535.1", "bioproject": "PRJNA224116", "biosample": "SAMN25761662", "wgs_master": "JAKQYM000000000.1", "refseq_category": "reference genome", "taxid": "2916838", "species_taxid": "2916838", "organism_name": "Polaribacter marinus", "infraspecific_name": "strain=MSW13", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2266253v1", "asm_submitter": "Chung-Ang university", "gbrs_paired_asm": "GCA_022662535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/662/535/GCF_022662535.1_ASM2266253v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3392882", "genome_size_ungapped": "3392882", "gc_percent": "30.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022662535.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3073", "protein_coding_gene_count": "3025", "non_coding_gene_count": "42", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter marinus" ], "sample_taxid": [ "2916838" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.929 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3392882", "Number of Sequences": "50", "Longest Sequences (bp)": "731210", "N50 (bp)": "296860", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.9", "Number of CDSs": "3046", "Average Protein Length": "333.1", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "35", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 81.9748, "matched_fragments": 660, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 81.6516, "matched_fragments": 651, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter sejongensis", "strain": "strain=KCTC 23670", "accession": "GCA_002814075.1", "taxid": 985043, "species_taxid": 985043, "relation_to_type": "type", "validated": true, "ani": 81.5659, "matched_fragments": 633, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 81.5646, "matched_fragments": 677, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter atrinae", "strain": "strain=KACC 17473", "accession": "GCA_001640115.1", "taxid": 1333662, "species_taxid": 1333662, "relation_to_type": "type", "validated": true, "ani": 81.5458, "matched_fragments": 663, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 81.0174, "matched_fragments": 629, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 80.8879, "matched_fragments": 633, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=LMG 26443", "accession": "GCA_020532845.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 80.8175, "matched_fragments": 616, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_002814055.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 80.7874, "matched_fragments": 633, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=KCTC 23969", "accession": "GCA_001680875.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 80.7713, "matched_fragments": 624, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter reichenbachii", "strain": "strain=6Alg 8T", "accession": "GCA_001975665.1", "taxid": 996801, "species_taxid": 996801, "relation_to_type": "type", "validated": true, "ani": 80.7425, "matched_fragments": 630, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 80.5725, "matched_fragments": 607, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001761365.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 80.5276, "matched_fragments": 600, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ATCC 43844", "accession": "GCA_002954665.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 80.4559, "matched_fragments": 602, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter glomeratus", "strain": "strain=ACAM 171", "accession": "GCA_007997115.1", "taxid": 102, "species_taxid": 102, "relation_to_type": "type", "validated": true, "ani": 80.4152, "matched_fragments": 594, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 80.4094, "matched_fragments": 600, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 80.2927, "matched_fragments": 559, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 79.9406, "matched_fragments": 524, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 79.7693, "matched_fragments": 561, "total_fragments": 1104, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000766795.1", "gtdb_species": "s__Polaribacter sp000766795", "ani": 82.1204, "matched_fragments": 656, "total_fragments": 1104, "gtdb_taxonomy": 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