{ "type": "genome", "identifier": "GCF_022669015.1", "organism": "Colwellia maritima", "title": "Colwellia maritima", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chung-Ang university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022669015.1", "bioproject": "PRJNA224116", "biosample": "SAMN25236339", "wgs_master": "JAKKSL000000000.1", "refseq_category": "reference genome", "taxid": "2912588", "species_taxid": "2912588", "organism_name": "Colwellia maritima", "infraspecific_name": "strain=MSW7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/21", "asm_name": "ASM2266901v1", "asm_submitter": "Chung-Ang university", "gbrs_paired_asm": "GCA_022669015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/669/015/GCF_022669015.1_ASM2266901v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5232771", "genome_size_ungapped": "5232771", "gc_percent": "37.500000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022669015.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5444", "protein_coding_gene_count": "4638", "non_coding_gene_count": "82", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-21", "dateModified": "2022-03-21", "datePublished": "2022-03-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Colwellia maritima" ], "sample_taxid": [ "2912588" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.469 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5232771", "Number of Sequences": "9", "Longest Sequences (bp)": "2036234", "N50 (bp)": "1151581", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.3", "Number of CDSs": "5926", "Average Protein Length": "251.0", "Coding Ratio (%)": "85.3", "Number of rRNAs": "16", "Number of tRNAs": "61", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudocolwellia agarivorans", "strain": "strain=QM50", "accession": "GCA_002000085.1", "taxid": 1911682, "species_taxid": 1911682, "relation_to_type": "type", "validated": true, "ani": 78.9716, "matched_fragments": 307, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia ponticola", "strain": "strain=OISW-25", "accession": "GCA_005885605.1", "taxid": 2304625, "species_taxid": 2304625, "relation_to_type": "type", "validated": true, "ani": 78.8149, "matched_fragments": 310, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 78.6546, "matched_fragments": 346, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia echini", "strain": "strain=A3", "accession": "GCA_002843355.2", "taxid": 1982103, "species_taxid": 1982103, "relation_to_type": "type", "validated": true, "ani": 78.609, "matched_fragments": 303, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia piezophila", "strain": "strain=ATCC BAA-637", "accession": "GCA_000378625.1", "taxid": 211668, "species_taxid": 211668, "relation_to_type": "type", "validated": true, "ani": 78.438, "matched_fragments": 297, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus lipolyticus", "strain": "strain=RZ04", "accession": "GCA_006439335.1", "taxid": 2491017, "species_taxid": 2491017, "relation_to_type": "type", "validated": true, "ani": 78.4324, "matched_fragments": 273, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 78.3817, "matched_fragments": 301, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus sediminis", "strain": "strain=JCM 17549", "accession": "GCA_004295665.1", "taxid": 718192, "species_taxid": 718192, "relation_to_type": "type", "validated": true, "ani": 78.3346, "matched_fragments": 297, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea marina", "strain": "strain=KCTC 42731", "accession": "GCA_014656435.1", "taxid": 1673741, "species_taxid": 1673741, "relation_to_type": "type", "validated": true, "ani": 77.2556, "matched_fragments": 162, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella marinintestina", "strain": "strain=LMG 21403", "accession": "GCA_023283845.1", "taxid": 190305, "species_taxid": 190305, "relation_to_type": "type", "validated": true, "ani": 75.7451, "matched_fragments": 53, "total_fragments": 1739, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": 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79.0211, "matched_fragments": 474, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.15", "min_intra_species_ani": "96.15", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003333305.1", "gtdb_species": "s__Colwellia aromaticivorans", "ani": 79.0128, "matched_fragments": 459, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002733765.1", "gtdb_species": "s__Colwellia sp002733765", "ani": 78.9805, "matched_fragments": 442, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.46", "min_intra_species_ani": "99.46", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_003521815.1", "gtdb_species": "s__Colwellia sp003521815", "ani": 78.7986, "matched_fragments": 322, "total_fragments": 1739, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005885605.1", "gtdb_species": "s__Colwellia ponticola", "ani": 78.7983, "matched_fragments": 310, "total_fragments": 1739, 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