{
    "type": "genome",
    "identifier": "GCF_022669045.1",
    "organism": "Xanthomonas indica",
    "title": "Xanthomonas indica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "CSIR-Institute of Microbial Technology",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022669045.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN25211474",
        "wgs_master": "JAKJPQ000000000.1",
        "refseq_category": "na",
        "taxid": "2912242",
        "species_taxid": "2912242",
        "organism_name": "Xanthomonas indica",
        "infraspecific_name": "strain=PPL560",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/21",
        "asm_name": "ASM2266904v1",
        "asm_submitter": "CSIR-Institute of Microbial Technology",
        "gbrs_paired_asm": "GCA_022669045.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/669/045/GCF_022669045.1_ASM2266904v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4796677",
        "genome_size_ungapped": "4796677",
        "gc_percent": "69.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022669045.1-RS_2024_05_06",
        "annotation_date": "2024-05-06",
        "total_gene_count": "4099",
        "protein_coding_gene_count": "3998",
        "non_coding_gene_count": "65",
        "pubmed_id": "36064810"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-21",
    "dateModified": "2022-03-21",
    "datePublished": "2022-03-21",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Xanthomonas indica"
        ],
        "sample_taxid": [
            "2912242"
        ],
        "sample_host_organism": [
            "Rice"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "India"
        ],
        "sample_host_location_id": [],
        "data_size": "1.285 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4796677",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "582077",
        "N50 (bp)": "262450",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "69.5",
        "Number of CDSs": "4060",
        "Average Protein Length": "343.5",
        "Coding Ratio (%)": "87.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
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                "organism_name": "Xanthomonas indica",
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                "species_taxid": 56458,
                "relation_to_type": "suspected-type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "species_taxid": 56455,
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                "status": "below_threshold"
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            {
                "organism_name": "Xanthomonas hyacinthi",
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                "species_taxid": 56455,
                "relation_to_type": "type",
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                "ani": 88.9277,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas translucens",
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                "species_taxid": 343,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas translucens",
                "strain": "strain=ATCC 19319",
                "accession": "GCA_020880735.1",
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                "relation_to_type": "type",
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            },
            {
                "organism_name": "Xanthomonas theicola",
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                "accession": "GCA_002940605.1",
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                "relation_to_type": "type",
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            {
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                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas albilineans",
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                "taxid": 29447,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5768,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas hydrangeae",
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                "taxid": 2775159,
                "species_taxid": 2775159,
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                "ani_threshold": 95,
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            {
                "organism_name": "Xanthomonas euvesicatoria",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthomonas citri",
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                "relation_to_type": "pathovar",
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                "ani": 82.0022,
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            }
        ],
        "cc_result": {
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}