{ "type": "genome", "identifier": "GCF_022678485.1", "organism": "Aliiroseovarius sediminis", "title": "Aliiroseovarius sediminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022678485.1", "bioproject": "PRJNA224116", "biosample": "SAMN26567107", "wgs_master": "JALBYP000000000.1", "refseq_category": "reference genome", "taxid": "2925839", "species_taxid": "2925839", "organism_name": "Aliiroseovarius sediminis", "infraspecific_name": "strain=N1F302", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/22", "asm_name": "ASM2267848v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_022678485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/678/485/GCF_022678485.1_ASM2267848v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3316613", "genome_size_ungapped": "3316613", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "39", "contig_count": "39", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022678485.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3283", "protein_coding_gene_count": "3150", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-22", "dateModified": "2022-03-22", "datePublished": "2022-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliiroseovarius sediminis" ], "sample_taxid": [ "2925839" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Bohai Sea" ], "sample_host_location_id": [], "data_size": "0.931 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3316613", "Number of Sequences": "39", "Longest Sequences (bp)": "505547", "N50 (bp)": "348873", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.0", "Number of CDSs": "3227", "Average Protein Length": "304.0", "Coding Ratio (%)": "88.7", "Number of rRNAs": "12", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliiroseovarius zhejiangensis", "strain": "strain=KCTC 42443", "accession": "GCA_014656375.1", "taxid": 1632025, "species_taxid": 1632025, "relation_to_type": "type", "validated": true, "ani": 82.2853, "matched_fragments": 704, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius sediminilitoris", "strain": "strain=DSM 29439", "accession": "GCA_900109955.1", "taxid": 1173584, "species_taxid": 1173584, "relation_to_type": "type", "validated": true, "ani": 81.9493, "matched_fragments": 655, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius marinus", "strain": "strain=A6024", "accession": "GCA_004360145.1", "taxid": 2500159, "species_taxid": 2500159, "relation_to_type": "type", "validated": true, "ani": 79.3975, "matched_fragments": 477, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius pelagivivens", "strain": "strain=CECT 8811", "accession": "GCA_900302485.1", "taxid": 1639690, "species_taxid": 1639690, "relation_to_type": "type", "validated": true, "ani": 78.9946, "matched_fragments": 459, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius halocynthiae", "strain": "strain=MA1-10", "accession": "GCA_007004645.1", "taxid": 985055, "species_taxid": 985055, "relation_to_type": "type", "validated": true, "ani": 78.9331, "matched_fragments": 434, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius crassostreae", "strain": "strain=CV919-312", "accession": "GCA_001307765.1", "taxid": 154981, "species_taxid": 154981, "relation_to_type": "type", "validated": true, "ani": 78.5314, "matched_fragments": 368, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfitobacter indolifex", "strain": "strain=DSM 14862", "accession": "GCA_022788655.1", "taxid": 225422, "species_taxid": 225422, "relation_to_type": "type", "validated": true, "ani": 78.085, "matched_fragments": 202, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola aestuarii", "strain": "strain=E2-1", "accession": "GCA_010614805.1", "taxid": 2697319, "species_taxid": 2697319, "relation_to_type": "type", "validated": true, "ani": 77.846, "matched_fragments": 226, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=CGMCC 1.7292", "accession": "GCA_900109195.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 77.4547, "matched_fragments": 249, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola nitratireducens", "strain": "strain=DSM 29619", "accession": "GCA_900112545.1", "taxid": 517719, "species_taxid": 517719, "relation_to_type": "type", "validated": true, "ani": 77.4121, "matched_fragments": 249, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { 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540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 76.7501, "matched_fragments": 237, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 76.74, "matched_fragments": 119, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014656375.1", "gtdb_species": "s__Aliiroseovarius zhejiangensis", "ani": 82.2741, "matched_fragments": 705, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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