{ "type": "genome", "identifier": "GCF_022678625.1", "organism": "Aliiroseovarius subalbicans", "title": "Aliiroseovarius subalbicans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong University at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022678625.1", "bioproject": "PRJNA224116", "biosample": "SAMN26567200", "wgs_master": "JALBYQ000000000.1", "refseq_category": "reference genome", "taxid": "2925840", "species_taxid": "2925840", "organism_name": "Aliiroseovarius subalbicans", "infraspecific_name": "strain=N1Y82", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/22", "asm_name": "ASM2267862v1", "asm_submitter": "Shandong University at Weihai", "gbrs_paired_asm": "GCA_022678625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/678/625/GCF_022678625.1_ASM2267862v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3531661", "genome_size_ungapped": "3531661", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "15", "contig_count": "15", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022678625.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3511", "protein_coding_gene_count": "3433", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-22", "dateModified": "2022-03-22", "datePublished": "2022-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Aliiroseovarius subalbicans" ], "sample_taxid": [ "2925840" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Bohai Sea" ], "sample_host_location_id": [], "data_size": "0.988 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3531661", "Number of Sequences": "15", "Longest Sequences (bp)": "1544438", "N50 (bp)": "537292", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.3", "Number of CDSs": "3448", "Average Protein Length": "307.3", "Coding Ratio (%)": "90.0", "Number of rRNAs": "3", "Number of tRNAs": "45", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aliiroseovarius zhejiangensis", "strain": "strain=KCTC 42443", "accession": "GCA_014656375.1", "taxid": 1632025, "species_taxid": 1632025, "relation_to_type": "type", "validated": true, "ani": 78.8843, "matched_fragments": 507, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius marinus", "strain": "strain=A6024", "accession": "GCA_004360145.1", "taxid": 2500159, "species_taxid": 2500159, "relation_to_type": "type", "validated": true, "ani": 78.7924, "matched_fragments": 449, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius pelagivivens", "strain": "strain=CECT 8811", "accession": "GCA_900302485.1", "taxid": 1639690, "species_taxid": 1639690, "relation_to_type": "type", "validated": true, "ani": 78.7342, "matched_fragments": 422, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius crassostreae", "strain": "strain=DSM 16950", "accession": "GCA_900116725.1", "taxid": 154981, "species_taxid": 154981, "relation_to_type": "type", "validated": true, "ani": 78.7095, "matched_fragments": 387, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius crassostreae", "strain": "strain=CV919-312", "accession": "GCA_001307765.1", "taxid": 154981, "species_taxid": 154981, "relation_to_type": "type", "validated": true, "ani": 78.6836, "matched_fragments": 400, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius mangrovi", "strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.6744, "matched_fragments": 442, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter alexandrii", "strain": "strain=LZ-17", "accession": "GCA_005871115.1", "taxid": 2570355, "species_taxid": 2570355, "relation_to_type": "type", "validated": true, "ani": 78.3915, "matched_fragments": 400, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.3772, "matched_fragments": 434, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliiroseovarius halocynthiae", "strain": "strain=MA1-10", "accession": "GCA_007004645.1", "taxid": 985055, "species_taxid": 985055, "relation_to_type": "type", "validated": true, "ani": 78.3765, "matched_fragments": 353, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Maritimibacter harenae", "strain": "strain=DP07", "accession": "GCA_009882975.1", "taxid": 2606218, "species_taxid": 2606218, "relation_to_type": "type", "validated": true, "ani": 78.3074, "matched_fragments": 415, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium luteum", "strain": "strain=318-1", "accession": "GCA_004358185.1", "taxid": 2547397, "species_taxid": 2547397, "relation_to_type": "type", "validated": true, "ani": 78.0821, "matched_fragments": 426, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=CECT 7751", "accession": "GCA_900172385.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 77.8827, "matched_fragments": 347, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola algae", "strain": "strain=Lw-13e", "accession": "GCA_003590145.2", "taxid": 1537215, "species_taxid": 1537215, "relation_to_type": "type", "validated": true, "ani": 77.8593, "matched_fragments": 302, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola marinus", "strain": "strain=LMG 23705", "accession": "GCA_002786295.1", "taxid": 396013, "species_taxid": 396013, "relation_to_type": "type", "validated": true, "ani": 77.8581, "matched_fragments": 352, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Falsiruegeria litorea", "strain": "strain=CECT 7639", "accession": "GCA_900172225.1", "taxid": 1280831, "species_taxid": 1280831, "relation_to_type": "type", "validated": true, "ani": 77.8005, "matched_fragments": 330, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Antarcticimicrobium sediminis", "strain": "strain=S4J41", "accession": "GCA_004348975.1", "taxid": 2546227, "species_taxid": 2546227, "relation_to_type": "type", "validated": true, "ani": 77.7935, "matched_fragments": 371, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 77.7797, "matched_fragments": 332, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter neptunius", "strain": "strain=DSM 26471", "accession": "GCA_900113955.1", "taxid": 588602, "species_taxid": 588602, "relation_to_type": "type", "validated": true, "ani": 77.7465, "matched_fragments": 303, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia marina", "strain": "strain=DSW4-44", "accession": "GCA_005771405.1", "taxid": 2578117, "species_taxid": 2578117, "relation_to_type": "type", "validated": true, "ani": 77.6916, "matched_fragments": 167, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6752, "matched_fragments": 380, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=DSM 26894", "accession": "GCA_900116195.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6179, "matched_fragments": 299, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yangia pacifica", "strain": "strain=CGMCC 1.3455", "accession": "GCA_900100725.1", "taxid": 311180, "species_taxid": 311180, "relation_to_type": "suspected-type", "validated": true, "ani": 77.563, "matched_fragments": 308, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 77.5151, "matched_fragments": 342, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_000819565.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 77.4057, "matched_fragments": 265, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter indicus", "strain": "strain=P73", "accession": "GCA_900106965.1", "taxid": 1208324, "species_taxid": 1208324, "relation_to_type": "type", "validated": true, "ani": 77.3958, "matched_fragments": 260, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Celeribacter halophilus", "strain": "strain=ZXM137", "accession": "GCA_001550085.1", "taxid": 576117, "species_taxid": 576117, "relation_to_type": "type", "validated": true, "ani": 77.2146, "matched_fragments": 208, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Palleronia sediminis", "strain": "strain=SS33", "accession": "GCA_004358695.1", "taxid": 2547833, "species_taxid": 2547833, "relation_to_type": "type", "validated": true, "ani": 77.1552, "matched_fragments": 255, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudophaeobacter flagellatus", "strain": "strain=MA21411-1", "accession": "GCA_021228235.1", "taxid": 2899119, "species_taxid": 2899119, "relation_to_type": "type", "validated": true, "ani": 77.0129, "matched_fragments": 233, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zongyanglinia huanghaiensis", "strain": "strain=CY05", "accession": "GCA_009753675.1", "taxid": 2682100, "species_taxid": 2682100, "relation_to_type": "type", "validated": true, "ani": 76.8539, "matched_fragments": 165, "total_fragments": 1170, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002367285.1", "gtdb_species": "s__Aliiroseovarius sp002367285", "ani": 80.7064, "matched_fragments": 576, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014656375.1", "gtdb_species": "s__Aliiroseovarius zhejiangensis", "ani": 78.8805, "matched_fragments": 508, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004360145.1", "gtdb_species": "s__Aliiroseovarius marinus", "ani": 78.7737, "matched_fragments": 451, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002285435.1", "gtdb_species": "s__Actibacterium ureilyticum", "ani": 78.7708, "matched_fragments": 465, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900302485.1", "gtdb_species": "s__Aliiroseovarius pelagivivens", "ani": 78.724, "matched_fragments": 423, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001307765.1", "gtdb_species": "s__Aliiroseovarius crassostreae", "ani": 78.6944, "matched_fragments": 399, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.06", "min_intra_species_ani": "95.64", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.84", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_009857745.1", "gtdb_species": "s__Thalassobius mangrovi", "ani": 78.6744, "matched_fragments": 442, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Thalassobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010500215.1", "gtdb_species": "s__Aliiroseovarius sp010500215", "ani": 78.6026, "matched_fragments": 440, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aliiroseovarius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900142185.1", "gtdb_species": "s__Lutimaribacter pacificus", "ani": 78.5137, "matched_fragments": 464, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Lutimaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009882975.1", "gtdb_species": "s__Maritimibacter harenae", "ani": 78.3346, "matched_fragments": 412, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Maritimibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000744955.1", "gtdb_species": "s__Actibacterium sp000744955", "ani": 78.2929, "matched_fragments": 453, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Actibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013031405.1", "gtdb_species": "s__Ruegeria sp013031405", "ani": 78.2174, "matched_fragments": 410, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Ruegeria", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003590145.2", "gtdb_species": "s__Pseudooceanicola algae", "ani": 77.8813, "matched_fragments": 300, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002786295.1", "gtdb_species": "s__Pseudooceanicola marinus", "ani": 77.8701, "matched_fragments": 350, "total_fragments": 1170, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pseudooceanicola", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { 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