{ "type": "genome", "identifier": "GCF_022678645.1", "organism": "Saccharopolyspora soli", "title": "Saccharopolyspora soli", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ondokuz Mayis University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022678645.1", "bioproject": "PRJNA224116", "biosample": "SAMN26668069", "wgs_master": "JALBWV000000000.1", "refseq_category": "reference genome", "taxid": "2926618", "species_taxid": "2926618", "organism_name": "Saccharopolyspora soli", "infraspecific_name": "strain=K220", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/22", "asm_name": "ASM2267864v1", "asm_submitter": "Ondokuz Mayis University", "gbrs_paired_asm": "GCA_022678645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/678/645/GCF_022678645.1_ASM2267864v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9354073", "genome_size_ungapped": "9354073", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "184", "contig_count": "184", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022678645.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "8915", "protein_coding_gene_count": "8703", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-22", "dateModified": "2022-03-22", "datePublished": "2022-03-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Saccharopolyspora soli" ], "sample_taxid": [ "2926618" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Cyprus" ], "sample_host_location_id": [], "data_size": "2.560 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9354073", "Number of Sequences": "184", "Longest Sequences (bp)": "345483", "N50 (bp)": "115534", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.3", "Number of CDSs": "8863", "Average Protein Length": "304.5", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "65", "Number of CRISPRs": "8" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Saccharopolyspora elongata", "strain": "strain=7K502", "accession": "GCA_004348985.1", "taxid": 2530387, "species_taxid": 2530387, "relation_to_type": "type", "validated": true, "ani": 85.9649, "matched_fragments": 1702, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora spinosa", "strain": "strain=NRRL 18395", "accession": "GCA_000194155.1", "taxid": 60894, "species_taxid": 60894, "relation_to_type": "type", "validated": true, "ani": 85.9564, "matched_fragments": 1458, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora phatthalungensis", "strain": "strain=DSM 45584", "accession": "GCA_014203395.1", "taxid": 664693, "species_taxid": 664693, "relation_to_type": "type", "validated": true, "ani": 85.9348, "matched_fragments": 1400, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora shandongensis", "strain": "strain=CGMCC 4.3530", "accession": "GCA_900106995.1", "taxid": 418495, "species_taxid": 418495, "relation_to_type": "type", "validated": true, "ani": 85.8893, "matched_fragments": 1682, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora spinosa", "strain": "strain=DSM 44228", "accession": "GCA_002846475.1", "taxid": 60894, "species_taxid": 60894, "relation_to_type": "type", "validated": true, "ani": 85.7826, "matched_fragments": 1476, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora subtropica", "strain": "strain=CGMCC 4.7206", "accession": "GCA_014646075.1", "taxid": 1530170, "species_taxid": 1530170, "relation_to_type": "type", "validated": true, "ani": 84.7015, "matched_fragments": 1273, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora flava", "strain": "strain=DSM 44771", "accession": "GCA_900116135.1", "taxid": 95161, "species_taxid": 95161, "relation_to_type": "type", "validated": true, "ani": 82.3697, "matched_fragments": 1247, "total_fragments": 3028, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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