{ "type": "genome", "identifier": "GCF_022695515.1", "organism": "Phenylobacterium aquaticum", "title": "Phenylobacterium aquaticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bacterial diversity in glacio-marine environment of Arctic", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022695515.1", "bioproject": "PRJNA224116", "biosample": "SAMN26849315", "wgs_master": "JALDPT000000000.1", "refseq_category": "reference genome", "taxid": "1763816", "species_taxid": "1763816", "organism_name": "Phenylobacterium aquaticum", "infraspecific_name": "strain=KACC 18306", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/25", "asm_name": "ASM2269551v1", "asm_submitter": "Bacterial diversity in glacio-marine environment of Arctic", "gbrs_paired_asm": "GCA_022695515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/695/515/GCF_022695515.1_ASM2269551v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5245083", "genome_size_ungapped": "5245083", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022695515.1-RS_2024_03_14", "annotation_date": "2024-03-14", "total_gene_count": "5280", "protein_coding_gene_count": "5010", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-25", "dateModified": "2022-03-25", "datePublished": "2022-03-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Phenylobacterium aquaticum" ], "sample_taxid": [ "1763816" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon city" ], "sample_host_location_id": [], "data_size": "1.429 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5245083", "Number of Sequences": "90", "Longest Sequences (bp)": "396914", "N50 (bp)": "114744", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.9", "Number of CDSs": "5289", "Average Protein Length": "295.3", "Coding Ratio (%)": "89.3", "Number of rRNAs": "2", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Phenylobacterium aquaticum", "strain": "strain=KACC 18306", "accession": "GCA_022695515.1", "taxid": 1763816, 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"type", "validated": true, "ani": 81.1701, "matched_fragments": 804, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium soli", "strain": "strain=LX32", "accession": "GCA_003254475.1", "taxid": 2170551, "species_taxid": 2170551, "relation_to_type": "type", "validated": true, "ani": 80.7666, "matched_fragments": 765, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium zucineum", "strain": "strain=HLK1", "accession": "GCA_000017265.1", "taxid": 284016, "species_taxid": 284016, "relation_to_type": "type", "validated": true, "ani": 80.4783, "matched_fragments": 727, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium parvum", "strain": "strain=HYN0004", "accession": "GCA_003150835.1", "taxid": 2201350, "species_taxid": 2201350, "relation_to_type": "type", "validated": true, "ani": 79.9683, "matched_fragments": 544, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": "strain=CGMCC 1.15915", "accession": "GCA_014645055.1", "taxid": 2010972, "species_taxid": 2010972, "relation_to_type": "type", "validated": true, "ani": 79.6109, "matched_fragments": 722, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter radicis", "strain": "strain=695", "accession": "GCA_003094615.1", "taxid": 2172650, "species_taxid": 2172650, "relation_to_type": "type", "validated": true, "ani": 79.5721, "matched_fragments": 714, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter hibisci", "strain": "strain=KACC 18849", "accession": "GCA_016135805.1", "taxid": 2035993, "species_taxid": 2035993, "relation_to_type": "type", "validated": true, "ani": 79.4651, "matched_fragments": 740, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=CGMCC1 15093", "accession": "GCA_002858845.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 79.3424, "matched_fragments": 735, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter flavus", "strain": "strain=RHGG3", "accession": "GCA_003722335.1", "taxid": 1679497, "species_taxid": 1679497, "relation_to_type": "type", "validated": true, "ani": 79.3262, "matched_fragments": 732, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 78.3236, "matched_fragments": 364, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 78.3036, "matched_fragments": 427, "total_fragments": 1703, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_016772415.1", "gtdb_species": "s__Phenylobacterium sp016772415", "ani": 82.4782, "matched_fragments": 902, "total_fragments": 1703, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Phenylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018001015.1", "gtdb_species": "s__Phenylobacterium 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