{ "type": "genome", "identifier": "GCF_022698165.1", "organism": "Streptomyces cylindrosporus", "title": "Streptomyces cylindrosporus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chulalongkorn University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022698165.1", "bioproject": "PRJNA224116", "biosample": "SAMN26734429", "wgs_master": "JALDAY000000000.1", "refseq_category": "reference genome", "taxid": "2927583", "species_taxid": "2927583", "organism_name": "Streptomyces cylindrosporus", "infraspecific_name": "strain=7R015", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/26", "asm_name": "ASM2269816v1", "asm_submitter": "Chulalongkorn University", "gbrs_paired_asm": "GCA_022698165.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/698/165/GCF_022698165.1_ASM2269816v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10929167", "genome_size_ungapped": "10929167", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "45", "contig_count": "45", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022698165.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "10193", "protein_coding_gene_count": "9955", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-26", "dateModified": "2022-03-26", "datePublished": "2022-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces cylindrosporus" ], "sample_taxid": [ "2927583" ], "sample_host_organism": [ "Barleria lupulina" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Thailand" ], "sample_host_location_id": [], "data_size": "2.936 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10929167", "Number of Sequences": "45", "Longest Sequences (bp)": "1120938", "N50 (bp)": "632885", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.0", "Number of CDSs": "10273", "Average Protein Length": "321.5", "Coding Ratio (%)": "90.7", "Number of rRNAs": "2", "Number of tRNAs": "81", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces panaciradicis", "strain": "strain=NBRC 109811", "accession": "GCA_023516615.1", "taxid": 1470261, "species_taxid": 1470261, "relation_to_type": "type", "validated": true, "ani": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces dysideae", "strain": "strain=RV15", "accession": "GCA_001514305.1", "taxid": 909626, "species_taxid": 909626, "relation_to_type": "type", "validated": true, "ani": 85.8813, "matched_fragments": 2090, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces ferrugineus", "strain": "strain=CCTCC AA2014009", "accession": "GCA_015160855.1", "taxid": 1413221, "species_taxid": 1413221, "relation_to_type": "type", "validated": true, "ani": 85.8275, "matched_fragments": 2169, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces caeruleatus", "strain": "strain=NRRL B-24802", "accession": "GCA_001514235.1", "taxid": 661399, "species_taxid": 661399, "relation_to_type": "type", "validated": true, "ani": 85.8261, "matched_fragments": 2161, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lanatus", "strain": "strain=JCM 4588", "accession": "GCA_014655715.1", "taxid": 66900, "species_taxid": 66900, "relation_to_type": "type", "validated": true, "ani": 85.66, "matched_fragments": 2192, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces davaonensis", "strain": "strain=JCM 4913", "accession": "GCA_000349325.1", "taxid": 348043, "species_taxid": 348043, "relation_to_type": "type", "validated": true, "ani": 85.659, "matched_fragments": 2048, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cellostaticus", "strain": "strain=DSM 40189", "accession": "GCA_001513965.1", "taxid": 67285, "species_taxid": 67285, "relation_to_type": "type", "validated": true, "ani": 85.3718, "matched_fragments": 2025, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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"strain=DSM 40273", "accession": "GCA_015160875.1", "taxid": 42881, "species_taxid": 42881, "relation_to_type": "type", "validated": true, "ani": 85.093, "matched_fragments": 1763, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces chromofuscus", "strain": "strain=JCM 4354", "accession": "GCA_014649435.1", "taxid": 42881, "species_taxid": 42881, "relation_to_type": "type", "validated": true, "ani": 84.9882, "matched_fragments": 1784, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces shenzhenensis", "strain": "strain=DSM 42034", "accession": "GCA_021462265.1", "taxid": 943815, "species_taxid": 943815, "relation_to_type": "type", "validated": true, "ani": 84.9521, "matched_fragments": 2114, "total_fragments": 3625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rishiriensis", "strain": "strain=NBRC 13407", "accession": 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