{ "type": "genome", "identifier": "GCF_022758145.1", "organism": "Pontibacter vulgaris", "title": "Pontibacter vulgaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ningbo University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022758145.1", "bioproject": "PRJNA224116", "biosample": "SAMN24256459", "wgs_master": "JAJVDH000000000.1", "refseq_category": "reference genome", "taxid": "2905679", "species_taxid": "2905679", "organism_name": "Pontibacter vulgaris", "infraspecific_name": "strain=NBU2972", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/28", "asm_name": "ASM2275814v1", "asm_submitter": "Ningbo University", "gbrs_paired_asm": "GCA_022758145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/758/145/GCF_022758145.1_ASM2275814v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4191305", "genome_size_ungapped": "4191305", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "36", "contig_count": "36", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022758145.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "3652", "protein_coding_gene_count": "3584", "non_coding_gene_count": "46", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-28", "dateModified": "2022-03-28", "datePublished": "2022-03-28", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter vulgaris" ], "sample_taxid": [ "2905679" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Ningbo city" ], 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"status": "below_threshold" }, { "organism_name": "Pontibacter fetidus", "strain": "strain=BT213", "accession": "GCA_010119545.1", "taxid": 2700082, "species_taxid": 2700082, "relation_to_type": "type", "validated": true, "ani": 80.2365, "matched_fragments": 614, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter pudoricolor", "strain": "strain=BT214", "accession": "GCA_010092985.1", "taxid": 2694930, "species_taxid": 2694930, "relation_to_type": "type", "validated": true, "ani": 79.7753, "matched_fragments": 562, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ruber", "strain": "strain=JC213", "accession": "GCA_023630205.1", "taxid": 1343895, "species_taxid": 1343895, "relation_to_type": "type", "validated": true, "ani": 79.5929, "matched_fragments": 652, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter burrus", "strain": "strain=BT327", "accession": "GCA_010686685.1", "taxid": 2704466, "species_taxid": 2704466, "relation_to_type": "type", "validated": true, "ani": 79.0735, "matched_fragments": 499, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter cellulosilyticus", "strain": "strain=SD6", "accession": "GCA_014306105.1", "taxid": 1720253, "species_taxid": 1720253, "relation_to_type": "type", "validated": true, "ani": 78.564, "matched_fragments": 467, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter arcticus", "strain": "strain=2b14", "accession": "GCA_003284895.1", "taxid": 2080288, "species_taxid": 2080288, "relation_to_type": "type", "validated": true, "ani": 78.4641, "matched_fragments": 462, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 78.359, "matched_fragments": 352, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ramchanderi", "strain": "strain=LP43", "accession": "GCA_002846395.1", "taxid": 1179743, "species_taxid": 1179743, "relation_to_type": "type", "validated": true, "ani": 78.2039, "matched_fragments": 355, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter roseus", "strain": "strain=DSM 17521", "accession": "GCA_000373265.1", "taxid": 336989, "species_taxid": 336989, "relation_to_type": "type", "validated": true, "ani": 78.1231, "matched_fragments": 326, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter mangrovi", "strain": "strain=HB172049", "accession": "GCA_006385705.1", "taxid": 2589816, "species_taxid": 2589816, "relation_to_type": "type", "validated": true, "ani": 78.1179, "matched_fragments": 393, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter virosus", "strain": "strain=DSM 100231", "accession": "GCA_003096355.1", "taxid": 1765052, "species_taxid": 1765052, "relation_to_type": "type", "validated": true, "ani": 78.1073, "matched_fragments": 370, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter chinhatensis", "strain": "strain=LP51", "accession": "GCA_900113285.1", "taxid": 1436961, "species_taxid": 1436961, "relation_to_type": "type", "validated": true, "ani": 77.9862, "matched_fragments": 395, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter indicus", "strain": "strain=LP100", "accession": "GCA_900156345.1", "taxid": 1317125, "species_taxid": 1317125, "relation_to_type": "type", "validated": true, "ani": 77.891, "matched_fragments": 368, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter beigongshangensis", "strain": "strain=T6-1", "accession": "GCA_014332515.1", "taxid": 2574733, "species_taxid": 2574733, "relation_to_type": "type", "validated": true, "ani": 77.7336, "matched_fragments": 296, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter silvestris", "strain": "strain=XAAS-R86T", "accession": "GCA_020907275.1", "taxid": 2305183, "species_taxid": 2305183, "relation_to_type": "type", "validated": true, "ani": 77.6486, "matched_fragments": 269, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter akesuensis", "strain": "strain=AKS 1T", "accession": "GCA_001611675.1", "taxid": 388950, "species_taxid": 388950, "relation_to_type": "type", "validated": true, "ani": 77.6412, "matched_fragments": 375, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter akesuensis", "strain": "strain=KCTC 12758", "accession": "GCA_014651555.1", "taxid": 388950, "species_taxid": 388950, "relation_to_type": "type", "validated": true, "ani": 77.6312, "matched_fragments": 378, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter akesuensis", "strain": "strain=DSM 18820", "accession": "GCA_900116885.1", "taxid": 388950, "species_taxid": 388950, "relation_to_type": "type", "validated": true, "ani": 77.6056, "matched_fragments": 382, "total_fragments": 1380, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014297265.1", "gtdb_species": "s__Pontibacter sp014297265", "ani": 80.5296, "matched_fragments": 591, "total_fragments": 1380, "gtdb_taxonomy": 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