{ "type": "genome", "identifier": "GCF_022758235.1", "organism": "Pontibacter liquoris", "title": "Pontibacter liquoris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ningbo University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022758235.1", "bioproject": "PRJNA224116", "biosample": "SAMN24255262", "wgs_master": "JALEBG000000000.1", "refseq_category": "reference genome", "taxid": "2905677", "species_taxid": "2905677", "organism_name": "Pontibacter liquoris", "infraspecific_name": "strain=NBU2971", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/29", "asm_name": "ASM2275823v1", "asm_submitter": "Ningbo University", "gbrs_paired_asm": "GCA_022758235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/758/235/GCF_022758235.1_ASM2275823v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4917612", "genome_size_ungapped": "4917612", "gc_percent": "51.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022758235.1-RS_2024_07_22", "annotation_date": "2024-07-22", "total_gene_count": "4113", "protein_coding_gene_count": "4055", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-29", "dateModified": "2022-03-29", "datePublished": "2022-03-29", "_annotation": { "sample_count": 1, "sample_organism": [ "Pontibacter liquoris" ], "sample_taxid": [ "2905677" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Ningbo city" ], 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"GCA_009931655.1", "taxid": 2694929, "species_taxid": 2694929, "relation_to_type": "type", "validated": true, "ani": 78.4053, "matched_fragments": 563, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter aquaedesilientis", "strain": "strain=JH31", "accession": "GCA_014773225.1", "taxid": 2766980, "species_taxid": 2766980, "relation_to_type": "type", "validated": true, "ani": 78.3663, "matched_fragments": 387, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter amylolyticus", "strain": "strain=CGMCC 1.12749", "accession": "GCA_014638845.1", "taxid": 1424080, "species_taxid": 1424080, "relation_to_type": "type", "validated": true, "ani": 78.3053, "matched_fragments": 483, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter oryzae", "strain": "strain=KIRAN", "accession": "GCA_003576375.1", "taxid": 2304593, "species_taxid": 2304593, "relation_to_type": "type", "validated": true, "ani": 78.2828, "matched_fragments": 450, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ramchanderi", "strain": "strain=LP43", "accession": "GCA_002846395.1", "taxid": 1179743, "species_taxid": 1179743, "relation_to_type": "type", "validated": true, "ani": 78.1068, "matched_fragments": 471, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter beigongshangensis", "strain": "strain=T6-1", "accession": "GCA_014332515.1", "taxid": 2574733, "species_taxid": 2574733, "relation_to_type": "type", "validated": true, "ani": 78.0143, "matched_fragments": 409, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter lucknowensis", "strain": "strain=DM9", "accession": "GCA_900156415.1", "taxid": 1077936, "species_taxid": 1077936, "relation_to_type": "type", "validated": true, "ani": 78.0118, "matched_fragments": 417, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_900188175.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 78.0076, "matched_fragments": 443, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botryobacter ruber", "strain": "strain=SYSU D60016", "accession": "GCA_003347595.2", "taxid": 2171629, "species_taxid": 2171629, "relation_to_type": "type", "validated": true, "ani": 77.9889, "matched_fragments": 411, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter arcticus", "strain": "strain=2b14", "accession": "GCA_003284895.1", "taxid": 2080288, "species_taxid": 2080288, "relation_to_type": "type", "validated": true, "ani": 77.9805, "matched_fragments": 400, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter ummariensis", "strain": "strain=NKM1", "accession": "GCA_003002015.1", "taxid": 1610492, "species_taxid": 1610492, "relation_to_type": "type", "validated": true, "ani": 77.9305, "matched_fragments": 447, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter roseus", "strain": "strain=DSM 17521", "accession": "GCA_000373265.1", "taxid": 336989, "species_taxid": 336989, "relation_to_type": "type", "validated": true, "ani": 77.9075, "matched_fragments": 460, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontibacter deserti", "strain": "strain=JC215", "accession": "GCA_023630255.1", "taxid": 1343896, "species_taxid": 1343896, "relation_to_type": "type", "validated": true, "ani": 77.8786, "matched_fragments": 388, "total_fragments": 1637, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 96.35, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_015694705.1", "gtdb_species": "s__Pontibacter sp015694705", "ani": 79.2302, "matched_fragments": 761, "total_fragments": 1637, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001907195.1", "gtdb_species": "s__Pontibacter sp001907195", "ani": 78.894, "matched_fragments": 652, "total_fragments": 1637, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__Hymenobacteraceae;g__Pontibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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