{ "type": "genome", "identifier": "GCF_022760175.1", "organism": "Zhouia spongiae", "title": "Zhouia spongiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Yantai University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022760175.1", "bioproject": "PRJNA224116", "biosample": "SAMN26816378", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2202721", "species_taxid": "2202721", "organism_name": "Zhouia spongiae", "infraspecific_name": "strain=HN-Y44", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/31", "asm_name": "ASM2276017v1", "asm_submitter": "Yantai University", "gbrs_paired_asm": "GCA_022760175.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/760/175/GCF_022760175.1_ASM2276017v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4040482", "genome_size_ungapped": "4040482", "gc_percent": "38.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022760175.1-RS_2024_04_12", "annotation_date": "2024-04-12", "total_gene_count": "3395", "protein_coding_gene_count": "3323", "non_coding_gene_count": "60", "pubmed_id": "29781798" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-31", "dateModified": "2022-03-31", "datePublished": "2022-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Zhouia spongiae" ], "sample_taxid": [ "2202721" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yangpu Bay" ], "sample_host_location_id": [], "data_size": "1.128 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4040482", "Number of Sequences": "1", "Longest Sequences (bp)": "4040482", "N50 (bp)": "4040482", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.4", "Number of CDSs": "3317", "Average Protein Length": "359.0", "Coding Ratio (%)": "88.4", "Number of rRNAs": "9", "Number of tRNAs": "47", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Zhouia spongiae", "strain": "strain=HN-Y44", "accession": "GCA_022760175.1", "taxid": 2202721, "species_taxid": 2202721, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1345, "total_fragments": 1346, "ani_threshold": 95, "status": "conclusive" }, { 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"strain=ck-I2-15", "accession": "GCA_000300875.1", "taxid": 555500, "species_taxid": 555500, "relation_to_type": "type", "validated": true, "ani": 77.0311, "matched_fragments": 86, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Robertkochia marina", "strain": "strain=CC-AMO-30D", "accession": "GCA_007279605.1", "taxid": 1227945, "species_taxid": 1227945, "relation_to_type": "type", "validated": true, "ani": 76.9137, "matched_fragments": 86, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella tangerina", "strain": "strain=M1309", "accession": "GCA_003260205.1", "taxid": 2023240, "species_taxid": 2023240, "relation_to_type": "type", "validated": true, "ani": 76.8613, "matched_fragments": 60, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leptobacterium flavescens", "strain": "strain=KCTC 22160", "accession": "GCA_010671605.1", 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"type", "validated": true, "ani": 76.6395, "matched_fragments": 58, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.6153, "matched_fragments": 51, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pustulibacterium marinum", "strain": "strain=CGMCC 1.12333", "accession": "GCA_900116665.1", "taxid": 1224947, "species_taxid": 1224947, "relation_to_type": "type", "validated": true, "ani": 76.5949, "matched_fragments": 102, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cerinum", "strain": "strain=1E403", "accession": "GCA_004028155.1", "taxid": 2502784, "species_taxid": 2502784, "relation_to_type": "type", "validated": true, "ani": 76.4862, "matched_fragments": 52, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina amphilecti", "strain": "strain=DSM 25232", "accession": "GCA_900109375.1", "taxid": 1038014, "species_taxid": 1038014, "relation_to_type": "type", "validated": true, "ani": 76.4815, "matched_fragments": 64, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mariniflexile gromovii", "strain": "strain=KCTC 12570", "accession": "GCA_017814435.1", "taxid": 362523, "species_taxid": 362523, "relation_to_type": "type", "validated": true, "ani": 76.481, "matched_fragments": 74, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Yeosuana aromativorans", "strain": "strain=JCM 12862", "accession": "GCA_014646655.1", "taxid": 288019, "species_taxid": 288019, "relation_to_type": "type", "validated": true, "ani": 76.4501, "matched_fragments": 61, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Winogradskyella litoriviva", "strain": "strain=KMM6491", "accession": "GCA_013249065.1", "taxid": 1220182, "species_taxid": 1220182, "relation_to_type": "type", "validated": true, "ani": 76.2611, "matched_fragments": 70, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Muricauda onchidii", "strain": "strain=XY-359", "accession": "GCA_004804315.1", "taxid": 2562684, "species_taxid": 2562684, "relation_to_type": "type", "validated": true, "ani": 76.1193, "matched_fragments": 56, "total_fragments": 1346, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 98.96, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900116365.1", "gtdb_species": "s__Zhouia amylolytica", "ani": 79.6811, "matched_fragments": 521, "total_fragments": 1346, "gtdb_taxonomy": 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