{
    "type": "genome",
    "identifier": "GCF_022760195.1",
    "organism": "Streptomyces rimosus subsp. rimosus",
    "title": "Streptomyces rimosus subsp. rimosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Bielefeld University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_022760195.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN20886742",
        "wgs_master": "na",
        "refseq_category": "na",
        "taxid": "132474",
        "species_taxid": "1927",
        "organism_name": "Streptomyces rimosus subsp. rimosus",
        "infraspecific_name": "strain=R7",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/03/31",
        "asm_name": "ASM2276019v1",
        "asm_submitter": "Bielefeld University",
        "gbrs_paired_asm": "GCA_022760195.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/760/195/GCF_022760195.1_ASM2276019v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "9660595",
        "genome_size_ungapped": "9660595",
        "gc_percent": "72.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_022760195.1-RS_2024_04_12",
        "annotation_date": "2024-04-12",
        "total_gene_count": "8512",
        "protein_coding_gene_count": "8229",
        "non_coding_gene_count": "92",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-03-31",
    "dateModified": "2022-03-31",
    "datePublished": "2022-03-31",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Streptomyces rimosus subsp. rimosus"
        ],
        "sample_taxid": [
            "132474"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "2.585 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 8.33,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "9660595",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "9368017",
        "N50 (bp)": "9368017",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "71.9",
        "Number of CDSs": "8685",
        "Average Protein Length": "324.3",
        "Coding Ratio (%)": "87.5",
        "Number of rRNAs": "21",
        "Number of tRNAs": "94",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
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                "accession": "GCA_022760195.1",
                "taxid": 132474,
                "species_taxid": 1927,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 3219,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
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                "accession": "GCA_000331185.2",
                "taxid": 132474,
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9972,
                "matched_fragments": 3213,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces rimosus",
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                "accession": "GCA_008704655.1",
                "taxid": 1927,
                "species_taxid": 1927,
                "relation_to_type": "type",
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                "ani": 99.9915,
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                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces rimosus subsp. rimosus",
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                "accession": "GCA_000717285.1",
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                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9686,
                "matched_fragments": 3143,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Streptomyces albofaciens",
                "strain": "strain=ATCC 23873",
                "accession": "GCA_008634025.1",
                "taxid": 66866,
                "species_taxid": 66866,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.0961,
                "matched_fragments": 2628,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces paromomycinus",
                "strain": "strain=NBRC 15454",
                "accession": "GCA_003865155.1",
                "taxid": 92743,
                "species_taxid": 92743,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.706,
                "matched_fragments": 2437,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces monomycini",
                "strain": "strain=NRRL B-24309",
                "accession": "GCA_022271435.1",
                "taxid": 371720,
                "species_taxid": 371720,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6584,
                "matched_fragments": 2354,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces pinistramenti",
                "strain": "strain=SF28",
                "accession": "GCA_020564935.1",
                "taxid": 2884812,
                "species_taxid": 2884812,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.9484,
                "matched_fragments": 1549,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Streptomyces rapamycinicus",
                "strain": "strain=NRRL 5491",
                "accession": "GCA_024298965.1",
                "taxid": 1226757,
                "species_taxid": 1226757,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.0778,
                "matched_fragments": 1564,
                "total_fragments": 3219,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 8.33,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_008704655.1",
                "gtdb_species": "s__Streptomyces rimosus",
                "ani": 99.9841,
                "matched_fragments": 3120,
                "total_fragments": 3219,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.17",
                "min_intra_species_ani": "96.53",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 49,
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            },
            {
                "accession": "GCF_008634025.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000720725.1",
                "gtdb_species": "s__Streptomyces rimosus_A",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001905005.1",
                "gtdb_species": "s__Streptomyces sp001905005",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003865135.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.95",
                "min_intra_species_ani": "95.89",
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                "num_clustered_genomes": 4,
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            },
            {
                "accession": "GCF_000715845.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.201,
        "cell_length": -0.05,
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        "growth_tmp": 28.0,
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        "rRNA16S_genes": 6.155,
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        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
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        "coccobacillus_cell_shape": 0.0,
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    },
    "_genome_taxon": [
        "Streptomyces",
        "rimosus",
        "subsp.",
        "rimosus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}