{ "type": "genome", "identifier": "GCF_022760805.1", "organism": "Candidatus Mycolicibacterium alkanivorans", "title": "Candidatus Mycolicibacterium alkanivorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of East Anglia", "publication": [ {} ], "properties": { "assembly_accession": "GCF_022760805.1", "bioproject": "PRJNA224116", "biosample": "SAMN21385979", "wgs_master": "JAIVFL000000000.1", "refseq_category": "reference genome", "taxid": "2954114", "species_taxid": "2954114", "organism_name": "Candidatus Mycolicibacterium alkanivorans", "infraspecific_name": "na", "isolate": "ANDR5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/03/31", "asm_name": "ASM2276080v1", "asm_submitter": "University of East Anglia", "gbrs_paired_asm": "GCA_022760805.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/022/760/805/GCF_022760805.1_ASM2276080v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4050246", "genome_size_ungapped": "4050246", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_022760805.1-RS_2024_08_29", "annotation_date": "2024-08-29", "total_gene_count": "3999", "protein_coding_gene_count": "3657", "non_coding_gene_count": "56", "pubmed_id": "35319019" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-03-31", "dateModified": "2022-03-31", "datePublished": "2022-03-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Candidatus Mycolicibacterium alkanivorans" ], "sample_taxid": [ "2954114" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Romania" ], "sample_host_location_id": [], "data_size": "1.106 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4050246", "Number of Sequences": "3", "Longest Sequences (bp)": "4049316", "N50 (bp)": "4049316", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.4", "Number of CDSs": "3915", "Average Protein Length": "309.1", "Coding Ratio (%)": "89.6", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Mycolicibacterium alkanivorans", "strain": "", "accession": "GCA_022760805.1", "taxid": 2954114, "species_taxid": 2954114, 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82.4885, "matched_fragments": 832, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rhodesiae", "strain": "strain=DSM 44223", "accession": "GCA_002086695.1", "taxid": 36814, "species_taxid": 36814, "relation_to_type": "type", "validated": true, "ani": 82.3927, "matched_fragments": 813, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aichiense", "strain": "strain=NCTC10820", "accession": "GCA_900453085.1", "taxid": 1799, "species_taxid": 1799, "relation_to_type": "type", "validated": true, "ani": 82.3383, "matched_fragments": 835, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium helvum", "strain": "strain=JCM 30396", "accession": "GCA_010731895.1", "taxid": 1534349, "species_taxid": 1534349, "relation_to_type": "type", "validated": true, "ani": 82.2881, "matched_fragments": 836, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium sphagni", "strain": "strain=ATCC 33027", "accession": "GCA_002250655.1", "taxid": 1786, "species_taxid": 1786, "relation_to_type": "type", "validated": true, "ani": 82.2697, "matched_fragments": 798, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 82.2272, "matched_fragments": 830, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium aromaticivorans", "strain": "strain=JS19b1", "accession": "GCA_000559085.2", "taxid": 318425, "species_taxid": 318425, "relation_to_type": "type", "validated": true, "ani": 82.2255, "matched_fragments": 820, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 81.1303, "matched_fragments": 708, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chitae", "strain": "strain=NCTC10485", "accession": "GCA_900637205.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 80.782, "matched_fragments": 683, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium chitae", "strain": "strain=JCM 12403", "accession": "GCA_010727725.1", "taxid": 1792, "species_taxid": 1792, "relation_to_type": "type", "validated": true, "ani": 80.7575, "matched_fragments": 671, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 80.7432, "matched_fragments": 691, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 80.0719, "matched_fragments": 646, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=JCM 6387", "accession": "GCA_022179545.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 79.9087, "matched_fragments": 630, "total_fragments": 1349, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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